DRSC/TRiP Functional Genomics Resources

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Protein Alignment pths and Ddx54

DIOPT Version :10

Sequence 1:NP_610090.1 Gene:pths / 35379 FlyBaseID:FBgn0032919 Length:507 Species:Drosophila melanogaster
Sequence 2:NP_082317.1 Gene:Ddx54 / 71990 MGIID:1919240 Length:874 Species:Mus musculus


Alignment Length:441 Identity:157/441 - (35%)
Similarity:236/441 - (53%) Gaps:23/441 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 QTSDEEEDLGSEEEQ-EDEDNNHKEG---------DSEAALSGEDDKGSEDDAAEEQKLT---WK 64
            |..|.:.|.|..|.| ||:....|.|         .||.....|.|......|..::|..   ::
Mouse    34 QGRDSDSDDGEFEIQAEDDARARKLGPGRALPSFPTSECVSDVEPDTREMVRAQNKKKKKSGGFQ 98

  Fly    65 DLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHAL----LE 125
            .:||:..:.:...:..:|.|:.|||:.|||.|.||||:.:|.||||||..|.||:...|    .:
Mouse    99 SMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQ 163

  Fly   126 NPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRL 190
            ...|  ||:|:||||||.|..:..:.||...|:|..:::||..|..|...|.:.|.|||||||||
Mouse   164 TGAR--ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL 226

  Fly   191 VDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRA 255
            | |:.......|::::|:|.|||||:..|.|..:|.:|:..||...:|.|||||:.|.:.:..||
Mouse   227 V-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARA 290

  Fly   256 SLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELA--GNSFMIFCSTCNNTVKTAL 318
            .|.:||.:.:....:..|||:.|:|.:....|...|:::|..:.  .:..::|.:|.::......
Mouse   291 GLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATKHHAEYLTE 355

  Fly   319 MLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKD 383
            :|...|::...::..:.|..|...|.||.....|.||.||:|:||||||.:|.|:|:..|...|.
Mouse   356 LLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKL 420

  Fly   384 YIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYK-CEEDEV 433
            ::|||||.|||||||.|.:||:..::.....:...||:.:||.: |||..|
Mouse   421 FLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARPCEEPSV 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pthsNP_610090.1 SrmB 62..480 CDD:440279 141/382 (37%)
Ddx54NP_082317.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..76 12/41 (29%)
DEADc_DDX54 95..299 CDD:350717 84/206 (41%)
Q motif 95..123 5/27 (19%)
DEAD box 246..249 2/2 (100%)
SF2_C_DEAD 310..441 CDD:350174 45/130 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 581..687
DBP10CT 706..766 CDD:462373
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 712..874
Blue background indicates that the domain is not in the aligned region.

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