DRSC/TRiP Functional Genomics Resources

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Protein Alignment pths and Ddx55

DIOPT Version :10

Sequence 1:NP_610090.1 Gene:pths / 35379 FlyBaseID:FBgn0032919 Length:507 Species:Drosophila melanogaster
Sequence 2:NP_080685.2 Gene:Ddx55 / 67848 MGIID:1915098 Length:600 Species:Mus musculus


Alignment Length:542 Identity:175/542 - (32%)
Similarity:252/542 - (46%) Gaps:119/542 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 WKDL--GLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLE 125
            |:.|  .|:..:..|..||.:...:.:|...||:.::.|||...|.||||||.||.:|||..||.
Mouse     9 WESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLR 73

  Fly   126 NPQR-----YFALVLTPTRELAFQIGE----------QFEALGSGIGIKCCVVVGGMDMVAQGLQ 175
            ..::     ..|:|:|||||||.||.|          ||..:         :.:||.:   .|..
Mouse    74 REEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQI---------LWIGGRN---PGED 126

  Fly   176 LAK-KPH---IIIATPGRLVDHL-ENMKGFNL----KAIKYLVMDEADRILNMDFEVELDKILKV 231
            :.: |.|   ||:||||||.|.. ...:|.:|    |::..||:|||||:|:|.||..::.||:.
Mouse   127 VERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEF 191

  Fly   232 LPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNK-------YQTVEQLQQSYLFIPVKYKDV 289
            ||::|||.|||||.|::|:.|.||.|::||::.|..|       .:|..:|:..|:......|..
Mouse   192 LPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFN 256

  Fly   290 YLVHILNELAGNSFMIFCSTCNNTVKTALMLRAL--GLAAIPLHGQMSQNKRLAALNKFKAKNRS 352
            .|||.|........::|.|||.........|.||  .:..:.:||:| :.||.....:|:.....
Mouse   257 QLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEFRKLQSG 320

  Fly   353 ILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEH 417
            ||:.|||.:||:|||.|:.|:.:|.|:::..::||.|||||.|..|.|:..:...: |.|  |..
Mouse   321 ILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPME-EAY--INF 382

  Fly   418 LLGKQLTLYKCEEDEV---------------MALQER----------VAEAQRTAKLE------L 451
            |...|    ||...|:               |||.:|          |:..|..||.|      |
Mouse   383 LAINQ----KCPLQEMSLQRNTIDLLPKLRAMALADRAVFEKGMKAFVSFVQAYAKHECSLIFRL 443

  Fly   452 KDLEDTRGGHKRG----------------------GDTHDDSENFTG-----ARKRM---KPMGG 486
            |||:  ..|..||                      .|...|:..|..     .|:::   |....
Mouse   444 KDLD--FAGLARGFALLRMPRMPELRGKQFPDFVPVDIDTDTIPFKDKIREKQRQKLLEQKRKER 506

  Fly   487 TGGGGRKSFGK-KNWSKGKQKR 507
            :...|||.|.| |.|||.|.|:
Mouse   507 SENEGRKKFIKNKAWSKQKAKK 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pthsNP_610090.1 SrmB 62..480 CDD:440279 163/509 (32%)
Ddx55NP_080685.2 Q motif 9..37 6/27 (22%)
DEADc_DDX55 20..224 CDD:350718 85/215 (40%)
DEAD box 171..174 2/2 (100%)
SF2_C_DEAD 242..372 CDD:350174 44/130 (34%)
DUF4217 405..462 CDD:464056 16/58 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 499..551 12/30 (40%)
Important for nuclear localization. /evidence=ECO:0000250|UniProtKB:Q8NHQ9 533..562
Blue background indicates that the domain is not in the aligned region.

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