DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pths and Hel25E

DIOPT Version :10

Sequence 1:NP_610090.1 Gene:pths / 35379 FlyBaseID:FBgn0032919 Length:507 Species:Drosophila melanogaster
Sequence 2:NP_723089.1 Gene:Hel25E / 33781 FlyBaseID:FBgn0014189 Length:424 Species:Drosophila melanogaster


Alignment Length:401 Identity:127/401 - (31%)
Similarity:217/401 - (54%) Gaps:24/401 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 DSEAALSGEDDKGSEDDAAEEQKLTWKDLG---------------LNEALCQACDELKWKAPSKI 87
            |::..|..||::.:|..|.|.|:...||:.               |...:.:|..:..::.||::
  Fly     3 DNDDLLDYEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEV 67

  Fly    88 QREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQR-YFALVLTPTRELAFQIGEQFEA 151
            |.|.||.|:.|.|::..|::|.|||..|.|..|..|..:... ...||:..||||||||.:::|.
  Fly    68 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYER 132

  Fly   152 LGSGI-GIKCCVVVGGMDMVAQGLQLAKK--PHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEA 213
            ....: .:|..|..||| .:.:..:..|.  |||::.||||::..:.|.| .|||.:|:.|:||.
  Fly   133 FSKYMPTVKVAVFFGGM-AIQKDEETLKSGTPHIVVGTPGRILALIRNKK-LNLKLLKHFVLDEC 195

  Fly   214 DRIL-NMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQ-TVEQLQ 276
            |::| .:|...::.:|.:..|..::..:||||::|.::.:.:..::||::|.|.::.: |:..||
  Fly   196 DKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQ 260

  Fly   277 QSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLA 341
            |.|:.:....|:..|..:|:.|..|..:||..:....|..:.:|......||.:|..|:|.:||.
  Fly   261 QHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLN 325

  Fly   342 ALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVS- 405
            ...:||...:.||::|::..||:||..|::|.|:|:|..|..|:|||.|..|.|..|.|||.|| 
  Fly   326 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 390

  Fly   406 QYDIELYQRIE 416
            :.|.::...::
  Fly   391 ENDAKILNEVQ 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pthsNP_610090.1 SrmB 62..480 CDD:440279 119/377 (32%)
Hel25ENP_723089.1 DEADc_DDX39 40..248 CDD:350708 66/209 (32%)
SF2_C_DEAD 259..388 CDD:350174 46/128 (36%)

Return to query results.
Submit another query.