DRSC/TRiP Functional Genomics Resources

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Protein Alignment Itgbn and Itgb4

DIOPT Version :9

Sequence 1:NP_001303333.1 Gene:Itgbn / 35368 FlyBaseID:FBgn0010395 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_038941223.1 Gene:Itgb4 / 25724 RGDID:2928 Length:1872 Species:Rattus norvegicus


Alignment Length:788 Identity:222/788 - (28%)
Similarity:364/788 - (46%) Gaps:118/788 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 WIYLVFLIAEISHSDADSIDDQCRHAD--SCERCLSAHLECAWCTDKEYQVGYRCLSRRQLLNYN 73
            |:.|:..:. :|.....::.::|:.|.  ||..|:.....||:|||:.:: ..||.::.:||...
  Rat     9 WVKLLLAVV-LSAGLPGNMANRCKKAQVKSCTECIRVDKSCAYCTDELFK-ERRCNTQAELLAAG 71

  Fly    74 CSETDIYENQPVLDVLQDKPLKDYETSDQAVQVTPQRAYLKLVKGNTQRMKLSYRTARNNPLDLY 138
            |....:...:..|::.::..:   :||....||:||...::|..|..:...........:|:|||
  Rat    72 CRGESVLVMESSLEITENIQI---DTSLHRSQVSPQGLQVRLRPGEERNFVFKVFEPLESPVDLY 133

  Fly   139 VLMDLTWTMRDDKKTLEELGAQLSQTLKNLTGNYRLGFGSFADKPTLPM--ILPQHRENPCAAER 201
            :|||.:.:|.||...|:::|..|::.|:.||.:|.:|||.|.||.::|.  :.|:..:.|.    
  Rat   134 ILMDFSNSMSDDLDNLKQMGQNLAKILRQLTSDYTIGFGKFVDKVSVPQTDMRPEKLKEPW---- 194

  Fly   202 ATCEPTYGYRHQLSLTDDIPAFTSAVANSKITGNLDNLEGGLDALMQVIVCTKEIGWKEQARKVV 266
            ...:|.:.:::.:|||:::..|...:...:|:||||..|||.||::|..|||::|||:..:..::
  Rat   195 PNSDPPFSFKNVISLTENVEEFWDKLQGERISGNLDAPEGGFDAILQTAVCTRDIGWRADSTHLL 259

  Fly   267 ILVTDGFMHLAGDG--LLAGIIQRNDKQCHLNKAGEYTGSLNYDYPSLEEIYRELLRRKINVIFA 329
            :..|:...|...||  :||||:.|||::|||:..|.||.....||||:..:.|.|.:..|..|||
  Rat   260 VFSTESAFHYEADGANVLAGIMNRNDEKCHLDATGAYTQYKTQDYPSVPTLVRLLAKHNIIPIFA 324

  Fly   330 VTEEVVSSYWELSALMKEISYVDILSADSSNILELIKKSYESLIKRTQF-ADNSPDFIDMAYYTD 393
            ||....|.|.:|.... .:|.:.:|..|||||:||:::::..:...... |.:||..:.....:|
  Rat   325 VTNYSYSYYEKLHKYF-PVSSLGVLQEDSSNIVELLEEAFYRIRSNLDIRALDSPRGLRTEVTSD 388

  Fly   394 CGGQFPSLQKRNYCNNVTLGKQIDFYVDVTLKKYPDNQVYTHKIRVE----------ETSLSEFM 448
                  :|||....:......::..| :|.|:...|.. .||..::.          :.|.|:.:
  Rat   389 ------TLQKTETGSFHIKRGEVGTY-NVHLRAVEDID-GTHVCQMAKEDQRGNIHLKPSFSDGL 445

  Fly   449 DLDVE-LQRPCPCQETPDPENEEGRFLCDYKGYLYCGMCECDEGWTGTYCNCPTDATNVTSNEAL 512
            .:|.. :...|.|:...:.::..    |.|:|...||.|.|:|||:|..|||.|.:.:.|     
  Rat   446 RMDASVICDVCACELQKEVQSAR----CHYRGDFMCGHCVCNEGWSGKTCNCSTGSLSDT----- 501

  Fly   513 LQKCRQPFSDKSTSELVCSNHGDCDCGTCLC--DPGYTGPFCECR--EC-----LDCDEKLADCF 568
             |.|.:...||.     ||.||:|.||.|:|  :..|.|.|||..  :|     ..|::: ..|.
  Rat   502 -QPCLREGEDKP-----CSGHGECQCGRCVCYGEGRYEGHFCEYDNFQCPRTSGFLCNDR-GRCS 559

  Fly   569 CGQCVCKYGWSGSKCNCDGDTDACVGPTGEICSERGTCQCEECQCEEP---YLGKFCEIDPEKDN 630
            .|:|||:.||:|..|:|......|:...|.||:..|.|:|..|.|.:.   |....|||:.....
  Rat   560 MGECVCEPGWTGRSCDCPLSNATCIDSNGGICNGLGFCECGRCHCNQRSSLYTDTTCEINYSAIR 624

  Fly   631 -KLCLFYEPCVTCLIEQKQGMG-----VC----------------ENLTEICSSLDRQETYPYNF 673
             .||.....||.|   |..|.|     .|                |.:.|.||..|..:...|::
  Rat   625 LGLCEDLRSCVQC---QAWGTGEKKGRTCEECNFKVKMVDELKKAEEVVEYCSFRDEDDDCTYSY 686

  Fly   674 VHELDPEQDQCLVRLVNKHGIQCDSFFVYQVIDHSNFLTIQAVDCEPPDYVALVGYISAFTLLIG 738
            ..|.|....                       .:|..|..:..||.|..:..|:      .|||.
  Rat   687 TVEGDGSPG-----------------------PNSTVLVHKKKDCPPGSFWWLI------PLLIF 722

  Fly   739 LLIIFIIL 746
            ||::.::|
  Rat   723 LLLLLVLL 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgbnNP_001303333.1 INB 38..460 CDD:197563 128/437 (29%)
EGF_2 524..552 CDD:285248 11/29 (38%)
Integrin_b_cyt 748..785 CDD:285884
Itgb4XP_038941223.1 vWFA 37..454 CDD:412136 127/433 (29%)
I-EGF_1 458..486 CDD:408172 9/31 (29%)
Integrin_B_tail 628..711 CDD:400356 20/108 (19%)
Calx_beta 992..1086 CDD:197594
fn3 1130..1210 CDD:394996
FN3 1222..1315 CDD:238020
FN3 1577..1658 CDD:238020
fn3 1691..1776 CDD:394996
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353963
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10082
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.950

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