DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Itgbn and Itgb7

DIOPT Version :9

Sequence 1:NP_001303333.1 Gene:Itgbn / 35368 FlyBaseID:FBgn0010395 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_037303.1 Gene:Itgb7 / 25713 RGDID:2929 Length:807 Species:Rattus norvegicus


Alignment Length:831 Identity:260/831 - (31%)
Similarity:387/831 - (46%) Gaps:121/831 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LVFLI----------AEISHS-------DAD-SIDDQCRHADSCERCLSAHLECAWCTDKEYQV- 59
            |:||:          .:|:.|       |.| |....|:.|.||::|:.:|..||||....:.. 
  Rat     8 LIFLLVLGGGQSELDTKITSSGETTEWEDPDLSPQGSCQPAPSCQKCILSHPSCAWCKQLNFTAS 72

  Fly    60 ----GYRCLSRRQLLNYNCSETDIYENQPVLDVLQDKPLKDYETSDQAVQVTPQRAYLKLVKGNT 120
                ..||..|.:||...|.|.::.|.:...:||||:||...:..:.|.|:.|||..:.|..|..
  Rat    73 GEAEARRCARREELLARGCPEQELEEPRGHQEVLQDRPLSQGDRGEGATQLAPQRIRVTLRPGEP 137

  Fly   121 QRMKLSYRTARNNPLDLYVLMDLTWTMRDDKKTLEELGAQLSQTLKNLTGNYRLGFGSFADKPTL 185
            |:.::.:..|...|:|||.||||:::|:||.:.:.:||..|...|:.:|.:.|:|||||.||..|
  Rat   138 QKFRVRFLRAAGYPVDLYYLMDLSYSMKDDLERVRQLGQALLLRLREVTHSVRIGFGSFVDKTVL 202

  Fly   186 PMI--LPQHRENPCAAERATCEPTYGYRHQLSLTDDIPAFTSAVANSKITGNLDNLEGGLDALMQ 248
            |.:  :|....:||.:....|:..:.|.|.|.||.|..||...|....::||||:.|||.||::|
  Rat   203 PFVSTVPSKLNHPCPSRLERCQAPFSYHHVLPLTRDAQAFEREVGRQNVSGNLDSPEGGFDAILQ 267

  Fly   249 VIVCTKEIGWKEQARKVVILVTDGFMHLAGDGLLAGIIQRNDKQCHLNKAGEYTGSLNYDYPSLE 313
            ..:|.::|||:..:| :::..:|...|.||||.|.||...:|.:|||:..|.||.|..:||||:.
  Rat   268 AALCQEQIGWRNVSR-LLVFTSDDTFHTAGDGKLGGIFMPSDGRCHLDSNGVYTNSAEFDYPSVG 331

  Fly   314 EIYRELLRRKINVIFAVTEEVVSSYWELSALMKEISYVDILSADSSNILELIKKSYESLIKRTQF 378
            ::.:.|....|..|||||...:..|.|||.|:.: |.|..||.||||:::||..:|::|......
  Rat   332 QVAQALTAANIQPIFAVTGATLPVYQELSQLIPK-SAVGELSEDSSNVVQLIMDAYDNLSSTVTL 395

  Fly   379 ADNS-PDFIDMAYYTDCGGQFPSL----QKRNYCNNVTLGKQIDFYVDVTLKK---YPDNQVYTH 435
            ..:| |..:.:::.:.|.....|.    .:|..||:|.:.:.:||:  |||:.   .|:    .|
  Rat   396 EHSSLPPGVSISFESHCRSPEKSEGEAGDRRGQCNHVRVNQMVDFW--VTLQASHCLPE----AH 454

  Fly   436 KIRVEETSLSEFMDLDVELQRPCPCQETPDPENEEGRFLCDYKGYLYCGMCECDEGWTGTYCNCP 500
            .:|:.....||  :|.|||...|.| ...|.: ....:..|.:|.|.||:|.|..|..|..|.| 
  Rat   455 VLRLWALGFSE--ELTVELHTLCDC-NCSDAQ-PRAPYCSDGQGDLQCGICSCAPGRLGQLCEC- 514

  Fly   501 TDATNVTSNEALLQKCRQPFSDKSTSELVCSNHGDCDCGTCLCDPGYTGPFCECRECLDCDEK-- 563
            ::|.  .|:..|...||.|   ..|..| ||..|.|.||.|.|....:|..|||.:. .|:..  
  Rat   515 SEAD--LSSPDLESGCRAP---NGTGPL-CSGKGRCQCGRCSCSGQSSGRLCECDDA-SCERHEG 572

  Fly   564 -----LADCFCGQCVCKYGWSGSKCNCDGDTDACVGPTGEICSERGTCQCEECQCEEPYLGKFCE 623
                 ...|.||.|.|....:|..|.|....|:||.|.|.:||..|.|:|..|||.:.|.|..| 
  Rat   573 ILCGGFGHCQCGVCHCHANRTGRACECSESVDSCVSPEGGLCSGHGDCKCNRCQCLDGYYGALC- 636

  Fly   624 IDPEKDNKL-----CLFYEPCVTCLIEQKQGMG-VCENLTEICSSLDRQETYPYNFVHELDPEQD 682
                 |..|     |..|..|..|   ...|.| :..|.:..|:.:        |....|.|..|
  Rat   637 -----DQCLGCKSPCEQYRDCAEC---GAFGTGPLAANCSAACADV--------NVTLALAPNLD 685

  Fly   683 Q--CLVRLVNKHGIQCDSFFVYQ-----VI----------DHSNFLTIQAVDCEPPDYVALVGYI 730
            .  |..|.::....    ||:.:     ||          ||:..:.:           ..||.|
  Rat   686 DGWCKERTLDNQLF----FFLVENSARGVILRVRPQEKGADHTRAIIL-----------GCVGGI 735

  Fly   731 SAFTLLIGLLIIFIILWYIRAKDAREYAKFEED--QKNSVRQENPIYRDPV 779
            .|    :||.::......:...|..||::||::  |.|..:..||:|:..|
  Rat   736 VA----VGLGLVLAYRLSVEVYDRLEYSRFEKERQQLNWKQDSNPLYKSAV 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgbnNP_001303333.1 INB 38..460 CDD:197563 153/436 (35%)
EGF_2 524..552 CDD:285248 11/27 (41%)
Integrin_b_cyt 748..785 CDD:285884 11/34 (32%)
Itgb7NP_037303.1 Integrin_beta 50..477 CDD:278776 153/436 (35%)
VESA1_N 538..>646 CDD:289551 39/114 (34%)
EGF_2 608..636 CDD:285248 12/27 (44%)
Integrin_B_tail 646..717 CDD:285239 18/85 (21%)
Integrin_b_cyt 750..791 CDD:285884 11/33 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1226
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100678
Panther 1 1.100 - - O PTHR10082
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.780

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