DRSC/TRiP Functional Genomics Resources

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Protein Alignment Itgbn and Itgbl1

DIOPT Version :9

Sequence 1:NP_001303333.1 Gene:Itgbn / 35368 FlyBaseID:FBgn0010395 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_663442.2 Gene:Itgbl1 / 223272 MGIID:2443439 Length:494 Species:Mus musculus


Alignment Length:392 Identity:113/392 - (28%)
Similarity:150/392 - (38%) Gaps:109/392 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   458 CPCQ----ETPDPENEEGRFLCDYKGYLYCGMCECDEGWTGTYCNCPT--DATNVTSNEALLQKC 516
            |.|.    ||.|.:...|...||      ||.|:||.||:|..|..||  |.|...||    |.|
Mouse    89 CECHEWICETYDGKTCAGHGNCD------CGKCKCDVGWSGEACQYPTKCDLTKKISN----QMC 143

  Fly   517 RQPFSDKSTSELVCSNHGDCDCGTCLCD--PGY---TGPFCEC--RECLDCDEK------LADCF 568
                  |::.:::|||.|.|.||.|.||  .|:   .|.||||  |||:| ||.      ...|:
Mouse   144 ------KNSQDVICSNAGTCHCGRCKCDNSDGHGLIYGKFCECDDRECID-DETEEVCGGHGKCY 201

  Fly   569 CGQCVCKYGWSGSKC--NCD----GDTDACVGPTGEICSERGTCQCEECQCEE--------PYLG 619
            ||.|.|:.||.|.||  .||    .....|..|.|::||.||||.|.||.|.:        ...|
Mouse   202 CGNCYCEAGWHGDKCEFQCDITPWESKRRCTSPDGKVCSNRGTCVCGECSCHDVDPTGDWGDIHG 266

  Fly   620 KFCEIDPEKD---------NKLCLFYEPC-------------------VTCLIEQKQGMGVCENL 656
            ..||.| |:|         :..|..:..|                   ..|.:..::....|:..
Mouse   267 DTCECD-ERDCRAVYDRYSDDFCSGHGQCNCGRCDCRAGWYGKKCEHPRNCPLSAEESTKKCQGS 330

  Fly   657 TEI-CSSLDRQE-----TYP------YNFVHELDPEQDQCLVRLV-NKHGI------QCDSFFVY 702
            ::: ||...|.|     .||      |....|.|..:.:.|..:| ..||:      .|:..:..
Mouse   331 SDLPCSGRGRCECGRCTCYPPGDSRVYGKTCECDDRRCEDLDGVVCGGHGMCSCGRCVCEKGWFG 395

  Fly   703 QVIDH---SNFLTIQAVD-CEPPDYVALVGYISAFTLLIGLLIIFIILWYIRAK----DAREYAK 759
            ::..|   .|....|:.. ||..|.....|..|..   .|..|.....|||..:    |.|:..|
Mouse   396 KLCQHLRKCNMTEEQSRSLCESADGTLCSGKGSCH---CGKCICSGEEWYISGEFCDCDDRDCDK 457

  Fly   760 FE 761
            .:
Mouse   458 HD 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgbnNP_001303333.1 INB 38..460 CDD:197563 1/1 (100%)
EGF_2 524..552 CDD:285248 12/32 (38%)
Integrin_b_cyt 748..785 CDD:285884 5/18 (28%)
Itgbl1NP_663442.2 Cysteine-rich tandem repeats 51..494 113/392 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1226
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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