DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Itgbn and pat-3

DIOPT Version :9

Sequence 1:NP_001303333.1 Gene:Itgbn / 35368 FlyBaseID:FBgn0010395 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_497787.1 Gene:pat-3 / 175504 WormBaseID:WBGene00003930 Length:809 Species:Caenorhabditis elegans


Alignment Length:808 Identity:268/808 - (33%)
Similarity:420/808 - (51%) Gaps:114/808 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 SCERCLSAHLECAWC------TDKEYQVGYRCLSRRQLLNYNCSETDIYENQPVLDVLQDKPLKD 96
            :|..|:..|..||||      ..|.|.   ||.||.:|:.:.|..:.|.:....||:.:|..|.|
 Worm    49 TCSACIQYHESCAWCGAPMFDEKKPYA---RCDSRAKLMEHGCPNSYIEDPATKLDITEDSKLSD 110

  Fly    97 ---YETSDQAVQVTPQRAYLKLVKGNTQRMKLSYRTARNNPLDLYVLMDLTWTMRDDKKTLEELG 158
               .|:.::|||:.||..|:::...:..|..::||.|.:.|:|||.||||:::|:|||:.|.|||
 Worm   111 QGQVESEEEAVQIKPQEMYVEIRPKSRVRFNVTYRQAVDYPVDLYYLMDLSYSMKDDKQKLSELG 175

  Fly   159 AQLSQTLKNLTGNYRLGFGSFADKPTLPMILP--QHRENPCAAERATCEPTYGYRHQLSLTDDIP 221
            ..|::.::.:|.|:|||||||.||..:|.|.|  :.:.:||.   ..|...||::||:|||.:..
 Worm   176 DLLAERMRTVTKNFRLGFGSFIDKKLMPFIDPRIEKQLSPCP---TPCAEPYGFKHQMSLTTNTA 237

  Fly   222 AFTSAVANSKITGNLDNLEGGLDALMQVIVCTKEIGWKEQARKVVILVTDGFMHLAGDGLLAGII 286
            .|.:.|..::|:||||..|||.||::|.:.|.|.|||:|:|||:::..||...|.||||.|||::
 Worm   238 KFKAEVDKAEISGNLDAPEGGFDAVVQALACNKTIGWRERARKMIVFSTDAGFHFAGDGRLAGVV 302

  Fly   287 QRNDKQCHLNKAGEYTGSLNYDYPSLEEIYRELLRRKINVIFAVTEEVVSSYWELSALMKEI-SY 350
            :.||..|||::.|.||.:||.||||:..:::.:..||.|||||||:.....|.:||..:.:: |.
 Worm   303 EPNDGTCHLDREGYYTETLNQDYPSIALLHQMIKDRKANVIFAVTKNNQDLYTQLSNALPDVSSS 367

  Fly   351 VDILSADSSNILELIKKSYESLIKRTQFAD--NSPDFIDMAYYTDC-GGQFPSLQKRNYCNNVTL 412
            |.:|:.||.||::||:|.|..:.::....|  |:.:.:.:.|.:.| .|  .:|:..|.|..:.:
 Worm   368 VGVLANDSRNIVDLIEKEYLKISEKIIMVDNANASEGLKLTYRSMCLDG--TTLKDTNVCEGIRV 430

  Fly   413 GKQIDFYVDVTLKKYPDNQVYTHKI-------RVEETSLSEFMDLDVELQRPCPCQETPDPENEE 470
            |.::.|  :|||:.       ||.|       |:..:.|.|.:.::|::...|.|:       .:
 Worm   431 GDEVQF--EVTLEN-------THCIDKRDFVLRIGPSGLDETLIVNVKVLCDCDCE-------RQ 479

  Fly   471 GRFL-----CDYKGYLYCGMCECDEGWTGTYCNCPTDATNVTSNEALLQKCRQPFSDKSTSELVC 530
            .|.:     |: .|.:.||:|.|..|..|.||.|....   .|..||.:||:     ::....:|
 Worm   480 DRIVTNSADCN-GGDMVCGVCRCKGGNVGKYCECNRPG---MSTAALNEKCK-----RTNESAIC 535

  Fly   531 SNHGDCDCGTCLCDP------GYTGPFCECR--ECLDCDEKL----ADCFCGQCVCKYGWSGSKC 583
            ...|.|:||.|.|:|      ..:|.||||.  .|...|.|:    .:|.||:|:|..||:|..|
 Worm   536 EGRGVCNCGRCECNPRANPEEQISGEFCECDNFNCPRHDRKICAEHGECNCGKCICAPGWTGRAC 600

  Fly   584 NCDGDTDACVGPTGEICSERGTCQCEECQC-EEP----YLGKFCEIDPEKDNKLCLFYEPCVTCL 643
            .|...||:|:...|:||:.:|.|.|..|:| :.|    |.|..|||.|....| |:.|:.||.| 
 Worm   601 ECPISTDSCLSANGKICNGKGECICGRCRCFDSPDGNRYSGAKCEICPTCPTK-CVEYKNCVMC- 663

  Fly   644 IEQKQGMGVCENLTEICSSL--------DRQETYPYNFVHELDPEQDQCLVRLVNKHGIQCDSFF 700
             :|.|...:.|...:.|...        :..||.|..||   ||..|             |..::
 Worm   664 -QQWQTGPLNETACDQCEFKVIPVEELPNLNETTPCQFV---DPADD-------------CTFYY 711

  Fly   701 VY---QVIDHSNFLTIQAVDCEPP-DYVALVGYISAFTLLIGLLIIFIILWYIRA--KDAREYAK 759
            :|   :..|::.....:..||.|| ..:|:|..:.|..:::|:|:  ::||.:..  .|..|||.
 Worm   712 LYYYDEATDNATVWVRKHKDCPPPVPVLAIVLGVIAGIVILGILL--LLLWKLLTVLHDRSEYAT 774

  Fly   760 FEEDQKNSV--RQENPIYRDPVGRYEVP 785
            |..::..:.  ..|||||:.....::.|
 Worm   775 FNNERLMAKWDTNENPIYKQATTTFKNP 802

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgbnNP_001303333.1 INB 38..460 CDD:197563 163/443 (37%)
EGF_2 524..552 CDD:285248 9/33 (27%)
Integrin_b_cyt 748..785 CDD:285884 10/40 (25%)
pat-3NP_497787.1 INB 49..474 CDD:197563 162/441 (37%)
Integrin_B_tail 654..735 CDD:285239 22/98 (22%)
Integrin_b_cyt 767..804 CDD:285884 11/36 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1226
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3795
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100678
Panther 1 1.100 - - O PTHR10082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.730

Return to query results.
Submit another query.