DRSC/TRiP Functional Genomics Resources

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Protein Alignment Itgbn and itgb6

DIOPT Version :9

Sequence 1:NP_001303333.1 Gene:Itgbn / 35368 FlyBaseID:FBgn0010395 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_001090775.1 Gene:itgb6 / 100037861 XenbaseID:XB-GENE-960432 Length:696 Species:Xenopus tropicalis


Alignment Length:726 Identity:241/726 - (33%)
Similarity:356/726 - (49%) Gaps:87/726 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 IYLVFLIAEISHSDADSIDDQCRHAD--SCERCLSAHLECAWCTDKEY----QVGYRCLSRRQLL 70
            |.|:.|.|.|.|. .:.:...|....  :|..||.....||||:.|.:    .:..||.:...|.
 Frog     3 IELICLFAFILHG-KNHVQGSCALGSTMTCGECLKLGPHCAWCSHKNFTDSLDIAVRCDTYEVLQ 66

  Fly    71 NYNCSETDIYENQPVLDVLQDKPLKD--YETSDQAVQVTPQRAYLKLVKGNTQRMKLSYRTARNN 133
            :..|....|......|:||::|||.:  .|.|..|.|::||:..|||..|.....::..|...|.
 Frog    67 SKGCPAESIEFPDSKLEVLRNKPLTEGAQENSSDATQISPQKLLLKLRPGRELTFQIDVRQTENY 131

  Fly   134 PLDLYVLMDLTWTMRDDKKTLEELGAQLSQTLKNLTGNYRLGFGSFADKPTLPMI--LPQHRENP 196
            |:|||.||||:.:|.||.||::|||:.||:.:..||.|::||||||.:||..|.|  :|:..|||
 Frog   132 PVDLYYLMDLSASMEDDLKTIKELGSSLSKEMSKLTNNFQLGFGSFVEKPVSPFIKTVPKDIENP 196

  Fly   197 CAAERATCEPTYGYRHQLSLTDDIPAFTSAVANSKITGNLDNLEGGLDALMQVIVCTKEIGWKEQ 261
            |.:....|.||:||:|.||||.:...|...|....|:||:|..|||.||:||..||.::|||:..
 Frog   197 CHSIPYYCLPTFGYKHVLSLTPNAQNFNEIVKKQWISGNIDTPEGGFDAIMQAAVCKEQIGWRNG 261

  Fly   262 ARKVVILVTDGFMHLAGDGLLAGIIQRNDKQCHLNKAGEYTGSLNYDYPSLEEIYRELLRRKINV 326
            :..:::.|:||..|...|..||||:..||..|||:.:.||..|...:|||:.::..:|:...|.:
 Frog   262 SLHLLVFVSDGDSHYGMDSKLAGIVIPNDGLCHLDSSNEYYMSTVQEYPSVGQLIEKLVENNILL 326

  Fly   327 IFAVTEEVVSSYWELSALMKEISYVDILSADSSNILELIKKSYESLIKRTQFADNSPDFIDMAYY 391
            |||||:..|..|...::|:...: |.:|:.||.|:|:||..:|:.|  |::        |::...
 Frog   327 IFAVTKAYVPLYQGYASLIPGAT-VGLLAKDSGNVLQLIINAYKEL--RSE--------IELEVL 380

  Fly   392 TDCGG---QFPSLQKRN-------YCNNVTLGKQIDFYVDVTLKKYPDNQVYTHKIRVEETSLSE 446
            .|..|   .|.:|...|       .|.::.:|.::.|.|.:|....   :.:|..|.::...|.|
 Frog   381 GDTEGLSLSFTALCNNNTAIPHSKKCQHLKVGDRVSFSVSITSASC---EKHTRHIVIKPVGLEE 442

  Fly   447 FMDLDVELQRPCPCQ---ETPDPENEEGRFLCDYKGYLYCGMCECDEGWTGTYCNCPTDATNVTS 508
              .|:||:|..|.||   |....|..:|      .|.|.||:|.|...:.|.:|.|...:.|.:|
 Frog   443 --SLEVEIQSECSCQCHREERSSECSKG------NGALECGVCVCYPPYLGDHCQCNEGSLNSSS 499

  Fly   509 NEALLQKCRQPFSDKSTSELVCSNHGDCDCGTCLCDPG----YTGPFCECRE--CLD-----CDE 562
                   |::..|        |...|:|.||.|:|.|.    ..|..|||.:  ||.     |..
 Frog   500 -------CKELDS--------CGGRGECYCGQCICYPSVYGRIYGSHCECDDFSCLRHRGVICAG 549

  Fly   563 KLADCFCGQCVCKYGWSGSKCNCDGDTDACVGPTGEICSERGTCQCEECQCEEPYL-GKFCEIDP 626
            . .||.||:|:|..|||||.|||..||..|:...|.:||.||.|.|.:|.|..|.: |..||..|
 Frog   550 H-GDCECGECICHSGWSGSYCNCTMDTQTCISENGALCSGRGECVCGKCVCNNPEVSGDVCERCP 613

  Fly   627 EKDNKLCLFYEPCVTC-LIEQKQGMGVCENLTEICSSLDRQETYPYNFVHELD-----PEQDQCL 685
            ...:. |.....||.| |:..::....||   |.|..:|...:...:|..:..     ..:::|.
 Frog   614 TCGDP-CSSKRACVECHLLPAEEQQEECE---ETCKLVDATVSNAEDFSEDKSISCSLQGENECA 674

  Fly   686 VRL---VNKHG 693
            :..   .::||
 Frog   675 ITFGMATDEHG 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgbnNP_001303333.1 INB 38..460 CDD:197563 156/439 (36%)
EGF_2 524..552 CDD:285248 9/31 (29%)
Integrin_b_cyt 748..785 CDD:285884
itgb6NP_001090775.1 Integrin_beta 30..454 CDD:278776 156/439 (36%)
Integrin_B_tail 619..695 CDD:285239 14/70 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10082
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

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