DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9270 and haf-3

DIOPT Version :9

Sequence 1:NP_995741.2 Gene:CG9270 / 35366 FlyBaseID:FBgn0032908 Length:1292 Species:Drosophila melanogaster
Sequence 2:NP_506927.2 Gene:haf-3 / 180056 WormBaseID:WBGene00001813 Length:666 Species:Caenorhabditis elegans


Alignment Length:734 Identity:168/734 - (22%)
Similarity:313/734 - (42%) Gaps:197/734 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 STLMFCFALPILFKGR-----KKTLEPTDLYNALKEHKA-------ETLGDKF---FATWQSEVR 67
            ||.:||||..:   ||     |.||        :|..:|       ||..:.:   .|:|:.   
 Worm    22 STRLFCFAPQV---GRSTGFLKSTL--------IKSKQAFRNVSVVETKRESYKLKNASWKD--- 72

  Fly    68 SCGDSPKKEPSIIRVILKVFG---WQLFLSGIVVGVLELGTRATL----PLILGALIAEF--TRN 123
                        ::.||.:.|   |:     |::|:..||..:::    |.:||.||.|:  |:.
 Worm    73 ------------LKAILSLAGPYKWR-----IMLGISFLGISSSIFLFTPRVLGKLIDEWDETKQ 120

  Fly   124 GNGDG-----LWAQIY--------GLTLILSILFSVLMFHPLMMGLMHLAMKMRV-AVSTAIYRK 174
            ...|.     |.|:.:        |:.::.:|..:..::      .||.|.::.: .:..:::..
 Worm   121 DKMDPNDKALLLARFFKENPIALAGVFMLGAIAIAARIY------CMHTAGQLVINDLRKSVFNS 179

  Fly   175 ALRLSRTALGDTTTGQVVNLISND-----------LGRFDRALIHFHFLWLGPLELLISSYFLYQ 228
            .||...........|::|:.:|.|           |....||||    ...|...|::     |.
 Worm   180 VLRQDMAFFDKNKVGEIVSRLSTDALIVGYSVSMNLSDGARALI----TCFGSGGLMV-----YT 235

  Fly   229 QIGVASLYGIVILLLFLPIQTFLSRLTSRLRHQTALRTDQRVRMMNEI----ISGIQVIKMYTWE 289
            .:.:..:..:|:.::   :.||  .:..:|:.:..|...:.|...|::    :|.::.::|...|
 Worm   236 SLAMCKVIFVVVPVI---VGTF--AVFGKLQRKYTLMMQEAVAGANQVATERLSSVRTVRMLVAE 295

  Fly   290 KPFGRLIERLRRSEMSSIR-KVNYIRGTLLSFEITLSRIAIFVSLLGFVLMGGELTAERAFSVTA 353
                       |.|:::.. |:|.|  ..:|.:..|::        ||:....:.|...|.|...
 Worm   296 -----------RKELAAYSDKINEI--WQISKKEGLAK--------GFMFGSFQFTGYLALSSIL 339

  Fly   354 FY--NILRRTVCKFFPSGMSQFAEMMV----TLRRIKGFMMRSETEALYLKG-GQTNKLFE---G 408
            ||  |::.:.:..:  ..:|.|....|    :|..:.||.:.      .:|| |.:::|||   .
 Worm   340 FYGSNLISQGLLTY--GELSSFCLYAVLSAGSLSAMSGFYLE------LMKGLGASSRLFELKNR 396

  Fly   409 EPLVKLQ------SFQARWNHDHV-------EPVLENINISLSPPQLVAVIGPVGSGKSSLIQAI 460
            ||.:.|:      :.:.....:||       :|:..||:..:...::.||:|..|||||::...:
 Worm   397 EPRIPLEGGVQIGNVKDTIRFEHVAFGYADRDPLFHNISFDVPAGKITAVVGSSGSGKSTIASLL 461

  Fly   461 LGELPGESGKLKVQG------DISY-------ASQEPWLFNASVRDNILFG-------------L 499
            |......||::.|.|      |.||       ..|||.||:.::::||::|             .
 Worm   462 LRLYDPTSGRILVDGTDLKDIDPSYWRRHIGTVGQEPVLFSTTIKENIIYGSLEPENVTDAEIVS 526

  Fly   500 PMDKHRYRNVIRNCALERDFELLHGDRTFVGERGASLSGGQRARISLARAVYRQADTYLLDDPLS 564
            ..|:......|....::.|        |.|||.|::|||||:.||::|||:..:.:..::|:..|
 Worm   527 AADQSNADEFISRFPIKYD--------TKVGEHGSTLSGGQKQRIAIARALVNKPNILIMDEATS 583

  Fly   565 AVDTHVGRHLFEECMRGFLRD--KLVILVTHQLQFLEHADLIVIMDKGKISAVGTYEEMLKSGQD 627
            |:|.. ..:|....:...|.:  :.|:::.|:|..::|||.||::|:|.::..|:|:|::.....
 Worm   584 ALDAS-SEYLVRIALNKLLANSKQTVMIIAHRLSTIKHADQIVVVDRGSVAESGSYDELIAIPDG 647

  Fly   628 -FGKLLATEAQEMGDSNQE 645
             |.||:  |.|..|..|.|
 Worm   648 IFRKLV--EKQTFGFKNPE 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9270NP_995741.2 CFTR_protein 6..1257 CDD:273530 168/734 (23%)
ABC_membrane 92..362 CDD:294371 58/307 (19%)
ABCC_MRP_domain1 412..611 CDD:213217 63/239 (26%)
ABC_membrane 718..981 CDD:294371
ABCC_MRP_domain2 1029..1250 CDD:213211
haf-3NP_506927.2 MdlB 70..657 CDD:224055 148/666 (22%)
ABC_membrane 96..366 CDD:279056 57/312 (18%)
P-loop_NTPase 415..656 CDD:304359 70/251 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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