Protein Alignment RPA2 and rpa-4

DIOPT Version :9

• Sequence 1: NP_001260652.1
• Gene: RPA2 / 35364
• FlyBaseID: FBgn0032906
• Length: 246
• Species: Drosophila melanogaster
• Sequence 2: NP_001379644.1
• Gene: rpa-4 / 186576
• WormBaseID: WBGene00019079
• Length: 293
• Species: Caenorhabditis elegans
• Alignment Length: 275
• Identity: 58/275 - (21%)
• Similarity: 102/275 - (37%)
• Gaps: 50/275 - (18%)

  Fly     2 NDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQYAMACVVAIVRNVETSS 66
            |.||.........|...||          :..::.|..:.:.::....:.....|.::.......
 Worm    24 NQSFQSLGDKLPLPVTLAS----------LSTKLEDTDDDSYQIGEYSFRTIHTVGVILEKSYED 78

  Fly    67 TKITYTLED--------HSGRIDAHYWLEEGDALKAPEVMVNNYVKVYGTTRSQGGSKTLMIFKL 123
            .|.||||.|        |:  :....:.:.|....:|.:..:..|::.|..::..|:|.::|:.|
 Worm    79 GKTTYTLHDPEDTAKIFHA--VQFGNYNDGGSKFVSPGLEEDTRVRLMGKLKNVAGNKMILIYYL 141

  Fly   124 LPVLDPNEVCTHLLEV----------LNARYR-AEDYQSKGGAGAGAGASSG------------S 165
            ..:.|..|.....||.          |..|.| ::.|:.:|.........:.            :
 Worm   142 QKLADNKEYEIFKLETQASYLFFKKNLIERMRTSKAYKWEGMLAPPLSRQNHKIDAQAILSPVIT 206

  Fly   166 GSIADFTASQSSAI----VSGLEPKQQAVFQ---AIKSNVSEEGISRKELKAKFSHISDSELTNI 223
            ..:...|.:||.:|    .|.|:.|..||.:   |.|....|||:..:.:.|:...|.:|.|.:|
 Worm   207 RQVKPTTKTQSESISPKTSSALKAKVGAVIRSEAASKGYGDEEGVPFERILARIKDIPESRLRDI 271

  Fly   224 LDFMISEGHIYSSID 238
            |..|...|.|||:.|
 Worm   272 LTEMGDSGMIYSARD 286

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RPA2	NP_001260652.1	RFA2	12..246	CDD:227560	55/265 (21%)
		RPA2_DBD_D	52..144	CDD:239924	21/109 (19%)
		RPA_C	<182..238	CDD:285937	20/58 (34%)
rpa-4	NP_001379644.1	RPA2_DBD_D	64..162	CDD:239924	20/99 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5235
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_102423
Panther	1	1.100	-	-	O	PTHR13989
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.900