Protein Alignment RPA2 and rpa-2

DIOPT Version :9

• Sequence 1: NP_001260652.1
• Gene: RPA2 / 35364
• FlyBaseID: FBgn0032906
• Length: 246
• Species: Drosophila melanogaster
• Sequence 2: NP_491446.1
• Gene: rpa-2 / 172092
• WormBaseID: WBGene00019767
• Length: 288
• Species: Caenorhabditis elegans
• Alignment Length: 272
• Identity: 55/272 - (20%)
• Similarity: 103/272 - (37%)
• Gaps: 43/272 - (15%)

  Fly     1 MNDSFGDFNATQTAPTGAASNQKGEGI-VPLVVKQIVD---APEGNIELFGMQYAMACVVAIVRN 61
            |.|...|..||..          ||.: ||:.:..:::   |.:....:...::|....|.||::
 Worm    23 MTDRKPDSKATTL----------GERLPVPVTISNLIEHFSAQDDKYVVGTFRFATVLTVGIVKD 77

  Fly    62 VETSSTKITYTLEDHSGRIDAHYWLE---EGDALKAPEVMVNNYVKVYGTTRSQGGSKTLMIFKL 123
            :....|..||.|.|.:.....:..|:   ||.......::....|:..|..:...|:.|:|:|.:
 Worm    78 ISQDGTTYTYDLCDPNNTEMEYRTLKYDNEGSTFDHSSIVEGTRVRAIGKLKGFDGNNTIMLFNI 142

  Fly   124 LPVLDPNEVCTHLLEVLNARY--------RAEDYQSKGGAGAGA-----------GASSGSGSIA 169
            .||.|..:.....||...||.        :.:...|.|..|..|           .:|.||.: .
 Worm   143 TPVEDDKDFTIFELEAEAARLFFQKNVSEKLKSVDSDGFQGMLAPPKSRMSQTSHQSSQGSDT-K 206

  Fly   170 DFTASQSSAIVSG------LEPKQQAVFQAIKSNVSEEGISRKELKAKFSHISDSELTNILDFMI 228
            :...:|...:::|      |..:..||..|:.....:||.....:..:....:.|.:...:..|:
 Worm   207 ERLYAQPQKVMTGANQGDVLRERITAVLMAVPEGSRDEGRHVSWIAEQIQETNISIVRKCVGEMV 271

  Fly   229 SEGHIYSSIDAD 240
            ..|.:|:::|.:
 Worm   272 ENGLVYTTVDEE 283

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RPA2	NP_001260652.1	RFA2	12..246	CDD:227560	50/261 (19%)
		RPA2_DBD_D	52..144	CDD:239924	23/94 (24%)
		RPA_C	<182..238	CDD:285937	11/61 (18%)
rpa-2	NP_491446.1	RPA2_DBD_D	68..163	CDD:239924	23/94 (24%)
		RFA2	42..282	CDD:227560	46/240 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160162470
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5235
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_102423
Panther	1	1.100	-	-	LDO	PTHR13989
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1086
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.860