DRSC/TRiP Functional Genomics Resources

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Protein Alignment sky and Tldc2

DIOPT Version :9

Sequence 1:NP_001260649.1 Gene:sky / 35359 FlyBaseID:FBgn0032901 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_038962640.1 Gene:Tldc2 / 502689 RGDID:1561343 Length:217 Species:Rattus norvegicus


Alignment Length:166 Identity:48/166 - (28%)
Similarity:78/166 - (46%) Gaps:33/166 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   427 SQACKNEDLFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYVRVEQHE-PTLLMIKTCNNEVFG 490
            ||.....::..|...||.|:|.:...|::.|...|.||...|.::|.|. |.||:::..:.::||
  Rat    48 SQVLGASEIKQLSLHLPPRVTGHPWNLIFCTSRDGFSLQRLYRQMEGHSGPVLLLLRDQDGQMFG 112

  Fly   491 AYCSSRWFERNVKDDKGQRQAYFGTGETFLFSLYPERAKYPWVGIEGDKDLGHSSELFMAADSKM 555
            |:.||.     ::..||    ::|||||||||..|:...:.|.        ||:| .|:..|...
  Rat   113 AFSSSA-----LRLSKG----FYGTGETFLFSFSPQLKVFKWT--------GHNS-FFVKGDLDS 159

  Fly   556 ITIGGGEGQAIWMDENIRFGKTDSCKTFNNPPLCPS 591
            :.:|.|...::            |..::.:|  |||
  Rat   160 LMMGSGRCVSL------------SPTSWGSP--CPS 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
skyNP_001260649.1 RabGAP-TBC 82..293 CDD:382990
TLDc 431..605 CDD:214733 46/162 (28%)
Tldc2XP_038962640.1 TLDc 48..>165 CDD:214733 42/134 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5142
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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