DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sky and Ncoa7

DIOPT Version :9

Sequence 1:NP_001260649.1 Gene:sky / 35359 FlyBaseID:FBgn0032901 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_038955206.1 Gene:Ncoa7 / 498995 RGDID:1566426 Length:977 Species:Rattus norvegicus


Alignment Length:635 Identity:129/635 - (20%)
Similarity:218/635 - (34%) Gaps:219/635 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 DASSQADKLSGIVE---ESDLYEGFAPHVETSEIKTLDFYNLPKQTGKEPALRSYTEIQQLLQQG 69
            |.:.:.||.||..|   ||.|    :.|.:..::|.::||           |....|..||.:  
  Rat   523 DEAPEVDKQSGSPENWRESTL----SIHEDLDKVKLIEFY-----------LNKNKEGSQLSE-- 570

  Fly    70 KKRDVKNILRENSWPINSPIRAQLWPMLCGQHQTKQQMLDGFYWEMVHQVFGTTELSEKPIMLPA 134
                  |:|:                                           :||||:..:.|.
  Rat   571 ------NVLK-------------------------------------------SELSERKSIEPD 586

  Fly   135 FVDATHCLPYHLTSTGRAVADRIVNVLGYDCPDITYSPVLYPITSILLHFMSEEEAYICLAG--- 196
            .:|.|  |...|...|             |.|..::                :|...:|:.|   
  Rat   587 GIDIT--LSSSLPQAG-------------DSPPESH----------------KEPGTLCVKGGGT 620

  Fly   197 ----LVGSKEKVFINQTKLQHEVTWKTVMQIAKKHTKSATSYFQRICPGLKLERIFMDWCWWILA 257
                |..|.|:...|.                |:...|..|...::|.|.:::.......|    
  Rat   621 PPPKLHPSAEETVTNN----------------KEALDSLESSLDKLCQGAQMDNRSEIQLW---- 665

  Fly   258 GLPFQHLVRIMDCYFHEGIKVLYRVALVILNLFHKECQSNNEWSPDNIKNDIGNALIKFCKKI-- 320
                                :|.|:.:.|.::...: :..::..|           :..|.|:  
  Rat   666 --------------------LLKRIQVPIEDILPSK-EEKSKTPP-----------MFLCIKVGK 698

  Fly   321 PVSPAKLLHAA----------------FSIRGLSTQYISRIFIKTEMLLKSRSVLTSGSKQLIKS 369
            |:..:...|:.                |::......::...|::....:..:.....|...:.|.
  Rat   699 PMRKSFASHSTTMVQQYGKRRKQPEYWFAVPRERVDHLYTFFVQWSPDVYGKDAKEQGFVVVEKE 763

  Fly   370 RSS--DNL---PTSQSQVNIQMMSHTLTIRE-KLHSESCRNLGEKSPGHRAIAMGVYPIHNLKSQ 428
            ..:  ||.   ||::|.       ..:|:.| |....:|....|:......:     ||....|.
  Rat   764 ELTMIDNFFSEPTTKSW-------EIITVEEAKRRKSTCSYYEEEEEEEEGL-----PILQSHSA 816

  Fly   429 ACKNEDLFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYVR-VEQHEPTLLMIKTCNNEVFGAY 492
            ..:|..:..|...||.|:..|...|.|:|.|||.||.|.|.: .....|.||:||..:|::||||
  Rat   817 LLENMHIEQLARRLPARVQGYPWRLAYSTLEHGTSLKTLYRKSASLDSPVLLVIKDMDNQIFGAY 881

  Fly   493 CSS--RWFERNVKDDKGQRQAYFGTGETFLFSLYPERAKYPWVGIEGDKDLGHSSELFMAADSKM 555
            .:.  |:.:.           |:|||||||::..|....:.|.|         .:..|:..|...
  Rat   882 ATHPFRFSDH-----------YYGTGETFLYTFSPNFKVFKWSG---------ENSYFINGDISS 926

  Fly   556 ITIGGGEGQ-AIWMDENIRFGKTDSCKTFNNPPLCPSGDFEIRVLEVYGF 604
            :.:|||.|: .:|:|.::..|:::||.||||..|....||.::.|||:.|
  Rat   927 LELGGGGGRFGLWLDADLYHGRSNSCSTFNNDILSKKEDFIVQDLEVWTF 976

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
skyNP_001260649.1 RabGAP-TBC 82..293 CDD:382990 28/217 (13%)
TLDc 431..605 CDD:214733 60/178 (34%)
Ncoa7XP_038955206.1 LysM 149..191 CDD:396179
TLDc 815..977 CDD:214733 61/182 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5142
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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