DRSC/TRiP Functional Genomics Resources

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Protein Alignment sky and Tbc1d24

DIOPT Version :9

Sequence 1:NP_001260649.1 Gene:sky / 35359 FlyBaseID:FBgn0032901 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_017452553.1 Gene:Tbc1d24 / 287110 RGDID:1306143 Length:562 Species:Rattus norvegicus


Alignment Length:598 Identity:177/598 - (29%)
Similarity:272/598 - (45%) Gaps:112/598 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 PALRSYTEIQQLLQQGKKRDVKNILRENSWPINSPIRAQLWPMLCGQHQTKQQMLD-GFYWEMVH 117
            |...:|||:|:|         |.:.|:..|..:..:|.:::..|......:....| ..|.::|.
  Rat    24 PKELNYTELQEL---------KQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVG 79

  Fly   118 QVFGTTELSEKPIMLPAFVDATHCLPYHLTSTGRAVADRIVNVLGYDCPDITYSPVLYPITSILL 182
            ::.|....|..|  ||.|||.|....|.|...|.....:|:..:....|||::.|.|..:.::||
  Rat    80 KIVGKHSSSSLP--LPEFVDNTQVPTYCLNPRGEGAVRKILLCIANQFPDISFCPALPAVVALLL 142

  Fly   183 HF-MSEEEAY--ICLAGLVGSKEKVFINQTKLQHEVTWKTVMQIAKKHTKSATSYFQRICPGLKL 244
            |: :.|.|.:  .|.........|..|:|:.|..|.:..|...:..|:.::|......:...:. 
  Rat   143 HYSIDEAECFEKACRILSCNDPGKKLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVL- 206

  Fly   245 ERIFMDWCWWILAGLPFQHLVRIMDCYFHEGIKVLYRVALVILNLFHKECQSNNEWSPDNIKNDI 309
             :::.||..|:...||..:..|:.|.:..||.||||||||.||..||| .::......||:|.||
  Rat   207 -QVYSDWQRWLFGELPLNYFARVFDVFLVEGYKVLYRVALAILKFFHK-VRAGQPLESDNVKQDI 269

  Fly   310 GNALIKFCKKI--PVSPAKLLHAAFSIRGLSTQYISRIFIKTEMLLKSRSVLTSGSKQLIKSRSS 372
            .    .|.|.|  .|||.|||..||:||..|.:.|..:.:..|..|:                  
  Rat   270 R----MFVKDIAKTVSPEKLLEKAFAIRLFSRKEIQLLQMANEKALR------------------ 312

  Fly   373 DNLPTSQSQVNIQMMSHTLTIREKLHSESCRNLGEKSPGHRAIAMGVYPIHNLKSQACKNEDLFT 437
                  |..:.::..|.:|:.|:.:|                  :.|: ..|.:|:....:::..
  Rat   313 ------QKGITVKQKSVSLSKRQFVH------------------LAVH-AENFRSEIVSVKEMRD 352

  Fly   438 LWSWLPVRITMYQPVLLYTTEEHGCSLTTFYVRVEQHEPTLLMIKTCNNEVFGAYCSSRWFERNV 502
            :|||:|.|..:.||:||:::.:||.||:.||.:.|.||||||:|||...||.|||.|:.|.||| 
  Rat   353 IWSWIPERFALCQPLLLFSSLQHGYSLSRFYFQCEGHEPTLLLIKTTQKEVCGAYLSTDWSERN- 416

  Fly   503 KDDKGQRQAYFGTGETFLFSLYPERAKYPWVGIEGDK-----------------DLGHS------ 544
              ..|.:.::|||||.|:|.|.||..:|.||.|:..:                 .:.||      
  Rat   417 --KFGGKLSFFGTGECFVFRLQPEVQRYEWVVIKHPELTKAASFKSSEAAANPCLISHSVSSDPA 479

  Fly   545 ------------------SELFMAADSKMITIGGGEGQAIWMDENIRFGKTDSCKTFNNPPLCPS 591
                              ..:|||..:..:.||||.|||:::|.::..|:|..|.||||.||| |
  Rat   480 DRLSPFLAARHFNLPSKTESMFMAGGNDCLIIGGGGGQALYIDGDLNRGRTGHCDTFNNQPLC-S 543

  Fly   592 GDFEIRVLEVYGF 604
            ..|.|..:|.:||
  Rat   544 ESFLIAAVEAWGF 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
skyNP_001260649.1 RabGAP-TBC 82..293 CDD:382990 59/214 (28%)
TLDc 431..605 CDD:214733 79/215 (37%)
Tbc1d24XP_017452553.1 RabGAP-TBC 48..253 CDD:366170 57/208 (27%)
TLDc 342..557 CDD:214733 80/219 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354345
Domainoid 1 1.000 118 1.000 Domainoid score I5754
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H27469
Inparanoid 1 1.050 239 1.000 Inparanoid score I3285
OMA 1 1.010 - - QHG45915
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006083
OrthoInspector 1 1.000 - - oto95815
orthoMCL 1 0.900 - - OOG6_104315
Panther 1 1.100 - - O PTHR23353
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4381
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.900

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