DRSC/TRiP Functional Genomics Resources

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Protein Alignment sky and lmd-3

DIOPT Version :10

Sequence 1:NP_001260649.1 Gene:sky / 35359 FlyBaseID:FBgn0032901 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_505173.2 Gene:lmd-3 / 179225 WormBaseID:WBGene00018700 Length:840 Species:Caenorhabditis elegans


Alignment Length:400 Identity:97/400 - (24%)
Similarity:150/400 - (37%) Gaps:117/400 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 KKHTKSATSYFQRICPGLKLERIFMDWCWWILAGLPFQHLVRIMDCYFHEGIKVLYRVALVILNL 289
            ||.:.|:.||.:.|..|.||:|.|    |:   .:|.....                      |:
 Worm   536 KKSSTSSPSYDEDIAFGNKLKREF----WF---AVPRNQAD----------------------NI 571

  Fly   290 FHKECQSNNEWSPDNIKNDIGNALIKFCKKIPVSPAKLLHAAFSIRGLSTQYISRIFIKTEMLLK 354
            :|...|    ||||..                              ||.|        .|....:
 Worm   572 YHFLLQ----WSPDKY------------------------------GLDT--------TTSTTEE 594

  Fly   355 SRSVLTSGSKQ----LIKSRSSDNLPTSQSQVNIQMMSHTLTIRE---KLHSESCRNLGEKSPGH 412
            ..||:::..:.    ::.|.:.::|...:|   ..:...:|..||   ...||.||.|.......
 Worm   595 PSSVMSNDGQDKGFIVLGSNADESLGGEKS---TPLFGSSLLNREWELVTVSEMCRRLSLDQELE 656

  Fly   413 RAIAMGVYPIHNLKSQACKNEDLFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYVRV----EQ 473
            ..|..|.     ..||......:..:...||.|...|..|.:|.:|:||.||.|.|.::    |.
 Worm   657 LPIPDGA-----ATSQILDELMIRQVMDILPPRAEGYPWVNIYNSEKHGFSLATMYRKMAEFDED 716

  Fly   474 HEPTLLMIKTCNNEVFGAYCSSRWFERNVKDDKGQRQAYFGTGETFLFSLYP-------ERAKYP 531
            ..|.||:|:.....||||..||.     ::.:    ..:||||::.|...:.       |..:|.
 Worm   717 LSPVLLIIRDTKEHVFGAVVSSA-----IRPN----DHFFGTGDSCLLWRFTGEVPHTRELRQYN 772

  Fly   532 WVGIEGDKDLGHSSELFMAADSKMITIGGGEGQ-AIWMDENIRFGKTDSCKTFNNPPLC-PSGDF 594
            |.|         .::.|:.|....::||.|.|: .:|:|.::..|.:..|:||:|.||| ...||
 Worm   773 WTG---------DNQYFVNAAKDSLSIGAGSGRNGLWLDADLNHGSSQKCETFDNEPLCGDDQDF 828

  Fly   595 EIRVLEVYGF 604
            .|:.:|.|||
 Worm   829 IIQFIEAYGF 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
skyNP_001260649.1 TBC 82..293 CDD:214540 15/67 (22%)
TLDc 431..605 CDD:214733 55/186 (30%)
lmd-3NP_505173.2 LysM 24..66 CDD:396179
TLDc 666..838 CDD:214733 56/189 (30%)
Blue background indicates that the domain is not in the aligned region.

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