DRSC/TRiP Functional Genomics Resources

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Protein Alignment sky and tbc1d24.2

DIOPT Version :9

Sequence 1:NP_001260649.1 Gene:sky / 35359 FlyBaseID:FBgn0032901 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_031750506.1 Gene:tbc1d24.2 / 100493941 XenbaseID:XB-GENE-5957473 Length:616 Species:Xenopus tropicalis


Alignment Length:618 Identity:177/618 - (28%)
Similarity:279/618 - (45%) Gaps:161/618 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 RDVKNILRENSWPINSPIRAQLWPMLCGQHQTKQQMLD-GFYWEMVHQVFGTTELSEKPIMLPAF 135
            :::|.:.||.:|.....:||:.:..:....:.:....| ..|.::..::||...:.:.  :||.|
 Frog    70 KELKRMAREGNWSNRRNLRAEAYNHIIKNIRCRSGTPDASVYHDVSERLFGRRGIQDH--LLPDF 132

  Fly   136 VDATHCLP--YHLTSTGRAVADRIVNVLGYDCPDITYSPVLYPITSILLHFMSEE-EAYICLAGL 197
            :|.  |||  |.|.:.|.....:::..:|...|||||||.|..:.::||||..:| |.:.....|
 Frog   133 LDG--CLPTVYCLNARGETAVKKVLICIGNQYPDITYSPSLPSVVALLLHFSEDEAECFERACRL 195

  Fly   198 VGSKE--KVFINQTKLQHEVTWKTVMQIAKKHTKSATSYFQRICP-GLKL--------ERIFMDW 251
            :...|  |.:::|:.|.:|.:..|...:|||:           || |.||        ..:|.||
 Frog   196 ISCTENHKCYVDQSFLAYEASCMTFGDLAKKY-----------CPAGHKLITTSCENSAEVFSDW 249

  Fly   252 CWWILAGLPFQHLVRIMDCYFHEGIKVLYRVALVILNLFHKECQSNNEWSPDNIKNDIGNALIKF 316
            ..||...|||::.:|:.|.:..||.||||||||.:|    |..:|:.|....::::||.:    |
 Frog   250 IMWIFGDLPFEYTIRVFDIFLIEGNKVLYRVALALL----KHYRSHLEHEVTDVRSDIQD----F 306

  Fly   317 CKKIP--VSPAKLLHAAFSIRGLSTQYISRIFIKTEMLLKSRSVLTSGSKQLIKSRSSDNLPTSQ 379
            .|.|.  :|..|||..||||         |:|...|:.|     |...:::.:..|.        
 Frog   307 VKNISHHLSVQKLLEKAFSI---------RLFSHKELWL-----LQLANRKALSQRG-------- 349

  Fly   380 SQVNIQMMSHTLTIREKLHSESCRNLGEKSPGHRAIAMGVYPIHNLKSQACKNEDLFTLWSWLPV 444
                       :|:.:           .:.|.|.::     .:....|.....:::..:|||:|.
 Frog   350 -----------ITVMQ-----------PRQPAHMSV-----DLLEFSSVIVTAQEMRVIWSWIPE 387

  Fly   445 RITMYQPVLLYTTEEHGCSLTTFYVRVEQHEPTLLMIKTCNNEVFGAYCSSRWFERNVKDDKGQR 509
            |.::|.||||::|.|||.||..||...|..|||:|:|||...||.|::.||.|.||  :...||.
 Frog   388 RFSLYPPVLLFSTMEHGYSLQRFYSHCEGFEPTVLLIKTTGEEVCGSFLSSDWNER--RKCSGQV 450

  Fly   510 QAYFGTGETFLFSLYPERAKYPWVGIE-------------------------------------- 536
            ..||||||.|:||:.||..:|.||.::                                      
 Frog   451 ATYFGTGECFVFSVRPEMERYEWVVVKKPELVKSAPPSPCSRPRSYSHGSRASTSPLRPSSPTLS 515

  Fly   537 ----------------GDKDLGH---------------SSELFMAADSKMITIGGGEGQAIWMDE 570
                            ||...|.               ::.:||:.:|..|.||||.|||:.:|.
 Frog   516 SAPSSPSPSPNFLTVPGDVSSGRLSPFLSVRHFQLPTKTASMFMSGNSSGIIIGGGGGQALNIDA 580

  Fly   571 NIRFGKTDSCKTFNNPPLCPSGDFEIRVLEVYG 603
            ::..|:|:.|:||:|||||.. :|.|:.:||:|
 Frog   581 DLNTGRTEPCETFDNPPLCQE-NFHIQHIEVWG 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
skyNP_001260649.1 RabGAP-TBC 82..293 CDD:382990 68/225 (30%)
TLDc 431..605 CDD:214733 80/242 (33%)
tbc1d24.2XP_031750506.1 RabGAP-TBC 144..292 CDD:366170 54/162 (33%)
TLDc 372..614 CDD:214733 80/244 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 89 1.000 Domainoid score I7727
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 269 1.000 Inparanoid score I2948
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006083
OrthoInspector 1 1.000 - - otm47688
Panther 1 1.100 - - LDO PTHR23353
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4100
SonicParanoid 1 1.000 - - X4381
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.180

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