DRSC/TRiP Functional Genomics Resources

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Protein Alignment vari and CASK

DIOPT Version :9

Sequence 1:NP_724288.3 Gene:vari / 35343 FlyBaseID:FBgn0250785 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001354650.1 Gene:CASK / 8573 HGNCID:1497 Length:926 Species:Homo sapiens


Alignment Length:628 Identity:212/628 - (33%)
Similarity:331/628 - (52%) Gaps:95/628 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 TDLSDHDEIFLKGLLRSNSNTPHKELMLN-----PTEPQPVPLFLPAHLNNKPI-----CDDIIR 96
            ||.|:.|..||..:.:..    |...:|:     .|:..|       .:.|.|.     ..:::.
Human   361 TDCSEKDLDFLHSVFQDQ----HLHTLLDLYDKINTKSSP-------QIRNPPSDAVQRAKEVLE 414

  Fly    97 KFS--PSRRLESRELAKLLAQPHFRALLRAHDEIG-ALY-EQRLKAAGGSTS-QLEIASQRQTGG 156
            :.|  |... :::||.::|.||||.|||:.||.:. .:| ::.|:.....|| .|...|.....|
Human   415 EISCYPENN-DAKELKRILTQPHFMALLQTHDVVAHEVYSDEALRVTPPPTSPYLNGDSPESANG 478

  Fly   157 YLFTEDVLNTKMPVETIKMVGLRRDPSKPLGLTVELDEFKQLVVARILAGGVIDKQSMLHVGDVI 221
            .:..|:|..       :::|..:::..:|:|:|::::|....:||||:.||:|.:|..|||||.|
Human   479 DMDMENVTR-------VRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEI 536

  Fly   222 LEVNGTPV--RTPDELQVEVSRAKENLTLKIGPNV---------DEEIKSGRYTVSGGQVKQNGI 275
            .|:||..|  :|.::||..:...:.::|.||.|:.         |....|.:...:|.....|.:
Human   537 REINGISVANQTVEQLQKMLREMRGSITFKIVPSYRTQSSSCERDSPSTSRQSPANGHSSTNNSV 601

  Fly   276 ASLET-----GKKLTCYMRALFTYNPSEDSLLPCRDIGLPFKSGDILQIINVKDPNWWQAKNITA 335
            :.|.:     |:::  |:||.|.|:|::|.|:||::.|:.|:.|||:|||:..|.||||.|...:
Human   602 SDLPSTTQPKGRQI--YVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENS 664

  Fly   336 ESDKIGLIPSQELEERRKAFVAPEADYVHKIGICGTRISKRKR--KTMYRSVANCEFDKAELLLY 398
            ::...|||||.||:|.|.|.:|.|.....:...| |...|:|:  |..|.:..|..||:.:|:.|
Human   665 KNGTAGLIPSPELQEWRVACIAMEKTKQEQQASC-TWFGKKKKQYKDKYLAKHNAVFDQLDLVTY 728

  Fly   399 EEVTRMPPFRRKTLVLIGVSGVGRRTLKNRLINSDVDKFGAVIPHTSRPKRALEENGSSYWFMDR 463
            |||.::|.|:||||||:|..|||||.:||.||....|:|...||||:||.:..||||.:|:|:..
Human   729 EEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSH 793

  Fly   464 EEMEEAVRNNEFLEYGEHNGNLYGTHLQSIKDVINSGRMCILDCAPNALKILHNSQELMPFVIFV 528
            ::|.:.:.|||:||||.|...:|||.|::|:.:...|.:.|||..|.|||:|..: |..|||:|:
Human   794 DQMMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTA-EFAPFVVFI 857

  Fly   529 AAPGMEQLKTIYADRRATGSNRNLSFDRQSSIRFSSRRARTLESLASLYEDDDLVATVEESSFVQ 593
            |||      ||                                 ...|.||:.|....:||..:|
Human   858 AAP------TI---------------------------------TPGLNEDESLQRLQKESDILQ 883

  Fly   594 RKYEKYFDMVIVNEDFDETFRQVVETLDQMSHEEQWVPVNWIY 636
            |.|..|||:.|:|.:.|||.|.:.|.::.:....|||||:|:|
Human   884 RTYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWVY 926

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
variNP_724288.3 L27 <105..128 CDD:280918 12/22 (55%)
PDZ_signaling 173..250 CDD:238492 27/78 (35%)
SH3_MPP 287..347 CDD:212796 29/59 (49%)
Guanylate_kin 408..622 CDD:279019 82/213 (38%)
GuKc 418..622 CDD:214504 75/203 (37%)
CASKNP_001354650.1 STKc_CASK 8..307 CDD:270996
Calmodulin-binding 305..315
L27 348..401 CDD:197794 10/50 (20%)
L27 406..456 CDD:397114 15/50 (30%)
Required for interaction with NRXN1 (via C-terminal tail). /evidence=ECO:0000250|UniProtKB:Q62915 482..909 171/476 (36%)
PDZ_signaling 488..568 CDD:238492 28/79 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 574..610 5/35 (14%)
SH3_CASK 616..677 CDD:213014 29/60 (48%)
Guanylate_kin 738..911 CDD:395500 82/212 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D364535at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.920

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