DRSC/TRiP Functional Genomics Resources

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Protein Alignment vari and GK-1

DIOPT Version :9

Sequence 1:NP_724288.3 Gene:vari / 35343 FlyBaseID:FBgn0250785 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001323630.1 Gene:GK-1 / 818788 AraportID:AT2G41880 Length:416 Species:Arabidopsis thaliana


Alignment Length:377 Identity:88/377 - (23%)
Similarity:152/377 - (40%) Gaps:101/377 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 LQIINVKDPNWWQ----------AKNITA---ESDKIGLIPSQELEERRKAFVAPEADYVHKIGI 368
            :||.:....||:.          :|..:|   |..:|.:|...........|:..::.||     
plant    55 VQIYDKISNNWFSPIVLGTGPKPSKGYSAFVLEQGRILVIKKGSPRNDSIWFLEVDSPYV----- 114

  Fly   369 CGTRISKRKRKTMYRSVANCEFDKAELLLYEEVTRMPPFRRKTLVLIGVSGVGRRTLKNRLINSD 433
                   |::|.:.|.         |::.:.:..|  ....|.:|:.|.||||:.||.:.|:...
plant   115 -------REQKKLLRK---------EVVAWSKGVR--GNAEKPIVISGPSGVGKGTLISMLMKEF 161

  Fly   434 VDKFGAVIPHTSRPKRALEENGSSYWFMDREEMEEAVRNNEFLEYGEHNGNLYGTHLQSIKDVIN 498
            ...||..:.||:|..|::|.:|..|.|.|::.||:.:::.:|||:...:||||||.::|::.|.:
plant   162 PSMFGFSVSHTTRSPRSMEMDGVHYHFADKKVMEKEIKDGKFLEFASVHGNLYGTSIESVEAVTD 226

  Fly   499 SGRM-----------------------------CILDCAPNALKILHNSQELMPFVIFVAAPGME 534
            ||::                             ||||......:.:..| .|....|||..|.|:
plant   227 SGKVYKKAFGLITDAFCVFDLLNNEFCFCPTQRCILDIDVQGARSVRAS-SLDAIFIFVCPPSMK 290

  Fly   535 QLKTIYADR-RATGSNRNLSFDRQSSIRFSSRRARTLESLAS------LYEDD------------ 580
            :|:    || ||.|:..    :.|...|..:..|...|.::|      ||.|:            
plant   291 ELE----DRLRARGTET----EEQIQKRLRNAEAEIKEGISSGIFGLILYNDNLEECYKKLKNLL 347

  Fly   581 --DLVATVEESSF------VQRKYEKYFDMVIVNEDFDETFRQVVETLDQMS 624
              |.:|.|.....      ::....|..|.:|:.|...||..::|..:..::
plant   348 GLDGLAHVNGVEIEGINLPIEYAVSKMEDKIIIQETGKETRNKIVVDISSLN 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
variNP_724288.3 L27 <105..128 CDD:280918
PDZ_signaling 173..250 CDD:238492
SH3_MPP 287..347 CDD:212796 9/42 (21%)
Guanylate_kin 408..622 CDD:279019 71/269 (26%)
GuKc 418..622 CDD:214504 68/259 (26%)
GK-1NP_001323630.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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