DRSC/TRiP Functional Genomics Resources

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Protein Alignment vari and dlg1

DIOPT Version :9

Sequence 1:NP_724288.3 Gene:vari / 35343 FlyBaseID:FBgn0250785 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_031757617.1 Gene:dlg1 / 733937 XenbaseID:XB-GENE-1016132 Length:939 Species:Xenopus tropicalis


Alignment Length:516 Identity:133/516 - (25%)
Similarity:244/516 - (47%) Gaps:103/516 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 LRRDPSKPL------GLTVEL---DEFKQLVVARILAGGVIDKQSMLHVGDVILEVNGTPVR--T 231
            |.|:|.|.:      ||...:   ::.:.:.::.|||||..|....|..||.|:.|||..::  |
 Frog   460 LTREPRKVVLQRGTTGLGFNIVGGEDGEGIFISFILAGGPADLSGELQKGDRIMSVNGVDLKSAT 524

  Fly   232 PDELQVEVSRAKENLTLKIGPNVDE------EIKSGRYTVSGGQVKQNGIASLETGKKLTCYMRA 290
            .::....:..|.:.:|:......:|      :|...|..:....: .:|..||.|.:|.:.|:||
 Frog   525 HEQAAAALKNAGQTVTIVAQYRP
EEYSRFEAKIHDLREQMMNSSI-SSGSGSLRTSQKRSLYVRA 588

  Fly   291 LFTYNPSEDSLLPCRDIGLPFKSGDILQIINVKDPNWWQAKNITA--ESDKIGLIPSQELEERRK 353
            ||.|:.::||.||.:  ||.||.||||.::|..|..||||:.:||  ||::||:|||:...|:::
 Frog   589 LFDYDKTKDSGLPSQ--GLNFKFGDILHVVNASDDEWWQARQVTADGESEEIGVIPSKRRVEKKE 651

  Fly   354 AFVAPEADYVHKI-GICGTRISKRKRKTM-------YRSVANCEFDKAE---------------- 394
            ........:..|. |..|...:.:::|.:       |::....|.:.::                
 Frog   652 RARLKTVKFNSKARGDKGQSFNDKRKKNLFSRKFPFYKNKDQSEMETSDVDQHVTSNASDSESSY 716

  Fly   395 ------------------LLLYEEVTRMPPFRRKTLVLIGVSGVGRRTLKNRLINSDVDKFGAVI 441
                              :|.||.|.:......:.::::|.:   :..:.:.||:...:|||:.:
 Frog   717 LILITDEYGCSQGGQEEYVLSYEPVNQQEVNYSRPVIILGPT---KDRVNDDLISEFPEKFGSCV 778

  Fly   442 PHTSRPKRALEENGSSYWFM-DREEMEEAVRNNEFLEYGEHNGNLYGTHLQSIKDVINSGRMCIL 505
            |||:||||..|.:|..|.|: .||:||:.::::.|:|.|::|.:||||.:||:|:|...|:.|||
 Frog   779 PHTTRPKRDYEIDGRDYHFVTSREQMEKDIQDHRFIEAGQYNSHLYGTSVQSVKEVAERGKHCIL 843

  Fly   506 DCAPNALKILHNSQELMPFVIFVAAPGMEQLKTIYADRRATGSNRNLSFDRQSSIRFSSRRARTL 570
            |.:.||:|.|..:| |.|..||:....:|.:  |...:|.|......:::|...:          
 Frog   844 DVSGNAIKRLQIAQ-LYPIAIFIKPKSVENI--IEMSKRVTEEQGRKTYERAMKL---------- 895

  Fly   571 ESLASLYEDDDLVATVEESSFVQRKYEKYFDMVIVNEDFDETFRQVVETLDQMSHEEQWVP 631
                                  ::::.::|..::..:..:|.:.|:.:.:::.|....|||
 Frog   896 ----------------------EQEFTEHFTAIVQGDTLEEIYNQIKQIIEEQSSTFIWVP 934

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
variNP_724288.3 L27 <105..128 CDD:280918
PDZ_signaling 173..250 CDD:238492 22/82 (27%)
SH3_MPP 287..347 CDD:212796 33/61 (54%)
Guanylate_kin 408..622 CDD:279019 55/214 (26%)
GuKc 418..622 CDD:214504 54/204 (26%)
dlg1XP_031757617.1 L27_1 2..62 CDD:401120
MAGUK_N_PEST 106..222 CDD:402306
PDZ_signaling 223..307 CDD:238492
PDZ_signaling 316..402 CDD:238492
PDZ_assoc 403..465 CDD:402299 2/4 (50%)
PDZ 463..547 CDD:214570 20/83 (24%)
SH3_DLG1 582..648 CDD:212964 33/67 (49%)
Guanylate_kin 748..926 CDD:395500 55/215 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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