DRSC/TRiP Functional Genomics Resources

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Protein Alignment vari and Mpp4

DIOPT Version :10

Sequence 1:NP_724288.3 Gene:vari / 35343 FlyBaseID:FBgn0250785 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_067088.2 Gene:Mpp4 / 58808 RGDID:620016 Length:635 Species:Rattus norvegicus


Alignment Length:616 Identity:166/616 - (26%)
Similarity:282/616 - (45%) Gaps:148/616 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 CD--DIIRKFSPSRRLESRELAKLLAQPHFRALLRAHDEIGAL-YEQRLKAAGGSTSQLEIASQR 152
            |:  :::.|.|.|.  |.:||.::|..||.:|||||||.:... :|..|..              
  Rat    91 CEVLELLPKASSSP--EIQELRQVLQAPHCKALLRAHDTVAQKDFEPLLPP-------------- 139

  Fly   153 QTGGYLFTEDVLNTKMPVETIKMVGLRRDPSKPLGLTVELDEFK-QLVVARILAGGVIDKQSMLH 216
                  ..:::.:::..:.|:.:|    ...:|||.|::..|.. .::|||::.||::::..:|:
  Rat   140 ------LPDNIPDSEEAMRTVCLV----KNQQPLGATIKRHEITGDILVARVIHGGLVERSGLLY 194

  Fly   217 VGDVILEVNGTPVRTPDELQV--EVSRAKENLTLKIGPNVDEEIKSGRYTVSGGQVKQNGIASLE 279
            .||.::||||.||...|..||  .::.:...:..|:.|                      :::..
  Rat   195 AGDKLVEVNGVPVEGLDPEQVIHILAMSCGTIMFKVIP----------------------VSAPP 237

  Fly   280 TGKKLTCYMRALFTYNPSEDSLLPCRDIGLPFKSGDILQIINVKDPNWWQAKNITAESDKIGLIP 344
            ...:.|.|:||:..|.|.||..:||.|.||||..||||||::..|..||||:.|:..:...||||
  Rat   238 VSSQTTVYVRAMIDYWPQEDPDIPCMDAGLPFLKGDILQIVDQSDALWWQARKISDLAICAGLIP 302

  Fly   345 -----------------------------------------------------SQELEERRKAFV 356
                                                                 |:||.|.::.||
  Rat   303 SNHLLKRKQREFWWSQPYQPHTCLKSTRSLSVEEEDSMKIDEKCVEADEETFESEELAEAKEEFV 367

  Fly   357 APEADYVHKIGICGTRISKR--KRKTMYRSV-AN----CEFDKAELLLYEEVT---RMPPFRRKT 411
            .....:.    |.|.|.|.|  :||:.:..: ||    |....|....||||.   |.|..:.:.
  Rat   368 GDGQQFF----IAGFRRSMRLCRRKSHFSQLHANMRCTCSCYSAVGAPYEEVVRYQRQPADKHRL 428

  Fly   412 LVLIGVSGVGRRTLKNRLINSDVDKFGAVIPHTSRPKRALEENGSSYWFMDREEMEEAVRNNEFL 476
            :||:|.||||...|:.:||..:...|.:.:|||:|..::.|.:|..|.::.||..|..:..:..|
  Rat   429 IVLVGPSGVGVNELRRQLIGCNPSCFQSAVPHTTRSPKSYEMDGREYHYVSRETFESLMYGHRML 493

  Fly   477 EYGEHNGNLYGTHLQSIKDVINSGRMCILDCAPNALKILHNSQELMPFVIFVAAPGMEQLKTIYA 541
            |:||:.|:||||.:.::..|::.|::|::|..|..:: |..::||.|:|||:..|.|        
  Rat   494 EFGEYKGHLYGTSVNAVLAVLDEGKICVMDLEPQDIQ-LARTRELKPYVIFIKPPSM-------- 549

  Fly   542 DRRATGSNRNLSFDRQSSIRFSSRRARTLES--LASLYEDDDLVATVEESSFVQRKYEKYFDMVI 604
                            ||:|.|.|.|:.:..  :...::|:||....|.:..::.::.::||.||
  Rat   550 ----------------SSMRHSRRNAKIITDYFVDMKFKDEDLQEMEELAQKMESQFGQFFDHVI 598

  Fly   605 VNEDFDETFRQVVETLDQMSHEEQWVPVNWI 635
            ||::..:...|::..:.:...|.||||..|:
  Rat   599 VNDNLQDARAQLLSAIQKAEEELQWVPEAWV 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
variNP_724288.3 L27 <105..128 CDD:460717 13/22 (59%)
PDZ_MPP6-MPP2-like 174..252 CDD:467268 24/80 (30%)
SH3_MPP 287..347 CDD:212796 31/112 (28%)
Guanylate_kin 408..622 CDD:395500 61/215 (28%)
Mpp4NP_067088.2 L27 <47..82 CDD:197794
L27 89..135 CDD:460717 17/45 (38%)
PDZ_MPP3-MPP4-MPP7-like 154..232 CDD:467260 24/81 (30%)
SH3_MPP4 245..305 CDD:212967 30/59 (51%)
Guanylate_kin 427..617 CDD:395500 61/214 (29%)
Blue background indicates that the domain is not in the aligned region.

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