DRSC/TRiP Functional Genomics Resources

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Protein Alignment vari and dlg1a

DIOPT Version :9

Sequence 1:NP_724288.3 Gene:vari / 35343 FlyBaseID:FBgn0250785 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_005165955.1 Gene:dlg1a / 114446 ZFINID:ZDB-GENE-010724-8 Length:935 Species:Danio rerio


Alignment Length:515 Identity:138/515 - (26%)
Similarity:249/515 - (48%) Gaps:103/515 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 MVG---LRRDPSK------PLGLTVEL---DEFKQLVVARILAGGVIDKQSMLHVGDVILEVNGT 227
            |:|   :.|:|.|      ..||...:   ::.:.:.::.|||||..|....|..||.|:.|||.
Zfish   463 MLGDDEITREPRKIVLHRGTTGLGFNIVGGEDGEGIFISFILAGGPADLCGELRKGDRIVSVNGV 527

  Fly   228 PVR--TPDELQVEVSRAKENLTLKIGPNVDE------EIKSGRYTVSGGQVKQNGIASLETGKKL 284
            .:|  |.::....:..|.:.:|:......:|      :|...|..:....: .:|..||.|.:|.
Zfish   528 DLRSATHEQAAAALKNAGQTVTIIAQYRPEEYSRFEAKIHDLREQMMNSSI-SSGSGSLRTSQKR 591

  Fly   285 TCYMRALFTYNPSEDSLLPCRDIGLPFKSGDILQIINVKDPNWWQAKNIT--AESDKIGLIPSQE 347
            |.|:||||.|:.::||.||.:  ||.|:.||||.::|..|..||||:::|  .|.:::|:|||::
Zfish   592 TLYVRALFDYDITKDSGLPSQ--GLNFRFGDILHVLNASDEEWWQARHVTTDGEMEEMGVIPSKK 654

  Fly   348 LEERRKAFVAPEADYVHKIGICGTRISKRKRKTMY---------------------------RSV 385
            ..||::........:..|.......::.::|||::                           .|.
Zfish   655 RVERKERARLKTVKFNSKSRDKAQSLNDKRRKTLFSRKFLFSKNKDTGEQETSDVDQHVTSNASD 719

  Fly   386 ANCEFDKAE--LLLYEEVTRMPPFRRKTLVLIGVSGVGRRTLKNRLINSDV-----DKFGAVIPH 443
            :...|...|  :|.||.||:......:.::::|       .:|:| ||.|:     ||||:.:||
Zfish   720 SESSFRGQEDYVLSYETVTQQEVSYSRPVIILG-------PMKDR-INDDLISEFPDKFGSCVPH 776

  Fly   444 TSRPKRALEENGSSYWFMD-REEMEEAVRNNEFLEYGEHNGNLYGTHLQSIKDVINSGRMCILDC 507
            |:||||..|.:|..|.|:: ||:||:.:::::|:|.|::|.:||||.:||:::|...|:.||||.
Zfish   777 TTRPKRDYEVDGRDYHFVNSREQMEKDIQDHKFIEAGQYNNHLYGTSVQSVREVAEKGKHCILDV 841

  Fly   508 APNALKILHNSQELMPFVIFVAAPGMEQLKTIYADRRATGSNRNLSFDRQSSIRFSSRRARTLES 572
            :.||:|.|..:| |.|..:|:....:|.:  :..::|........::||...:            
Zfish   842 SGNAIKRLQLAQ-LYPIAVFIKPKSVENI--LEMNKRLMEEQGRKTYDRAMKL------------ 891

  Fly   573 LASLYEDDDLVATVEESSFVQRKYEKYFDMVIVNEDFDETFRQVVETLDQMSHEEQWVPV 632
                                ::::.::|..::..:..:|.:.||.:.:::.|....||||
Zfish   892 --------------------EQEFLEHFTAIVQGDTLEEIYNQVKQIIEEQSGPFIWVPV 931

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
variNP_724288.3 L27 <105..128 CDD:280918
PDZ_signaling 173..250 CDD:238492 24/88 (27%)
SH3_MPP 287..347 CDD:212796 29/61 (48%)
Guanylate_kin 408..622 CDD:279019 57/219 (26%)
GuKc 418..622 CDD:214504 56/209 (27%)
dlg1aXP_005165955.1 L27_1 4..62 CDD:286187
MAGUK_N_PEST 109..230 CDD:287565
PDZ_signaling 231..315 CDD:238492
PDZ_signaling 324..410 CDD:238492
PDZ_assoc 411..474 CDD:287558 3/10 (30%)
PDZ 472..556 CDD:214570 21/83 (25%)
SH3 588..661 CDD:302595 33/74 (45%)
Guanylate_kin 744..922 CDD:279019 57/220 (26%)
GuKc 755..922 CDD:214504 56/202 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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