DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vari and card14

DIOPT Version :9

Sequence 1:NP_724288.3 Gene:vari / 35343 FlyBaseID:FBgn0250785 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_002937355.2 Gene:card14 / 100486738 XenbaseID:XB-GENE-989887 Length:972 Species:Xenopus tropicalis


Alignment Length:712 Identity:123/712 - (17%)
Similarity:232/712 - (32%) Gaps:257/712 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 RQDKVELLARNNK-----VNGEDDTSDNAAFRNSTDLSDHDEIFLKG----LLRSNSNTPHKELM 68
            ||..:||..||::     ::.::........|.|....:..::..|.    |:|..:..|.:|  
 Frog   379 RQQVMELTDRNSELLQQILSLQEQLQTQREMRGSLHACEQRDVSTKSKHMRLVRMYAVCPSEE-- 441

  Fly    69 LNPTEPQPVPLFLPAHLNNKPICDDIIRKFSPSRRLESRELAKLLAQPHFRALLRAHDEIGALYE 133
                             .::.:...|...::.:....|.:|.:     .|.:....||:    |.
 Frog   442 -----------------GSRSLSSSISETWTENSCQTSSDLGE-----SFNSYAPPHDD----YL 480

  Fly   134 QRLKAAGG-------STSQLEIASQRQTGGYLFTEDVLNTKMPVETIKMVGLR--------RDPS 183
            ..|..:..       .|.:.|..|:.:.|..:|::  :.:.....:...:.:.        ||.|
 Frog   481 TDLTKSASQDLPDLLQTEKTETDSEYEEGLPMFSQ--MQSSESCSSYNNLAISVPRRRHACRDTS 543

  Fly   184 KPLGLTVELDE-FKQ----------LVVARILAGGVIDKQSMLHVGDVILEVNGTPVR------- 230
            :...:..:.|: .||          :.:.|:..|...|:.| |..|..|:.|:...:.       
 Frog   544 RVTVIAFQGDDLLKQISIIGGNRTGIFIHRVTEGSAADEMS-LRPGYQIIAVDFDVLNPSYKVAL 607

  Fly   231 ---TPDELQVEVSRAKENLTLKIGPNVDE------EIKSGRYTVSGG-----QVKQNGIASLETG 281
               |.::....::|......|.:..|.||      :|:||  :||.|     ||.|:....:..|
 Frog   608 EGMTSEDAHCILNRVNGFCCLSVKCNKDEYRKLLRDIESG--SVSSGDSFYVQVNQSMAGRVGGG 670

  Fly   282 KKLTCYMRALFTYNPSEDSLLPCRDIGLPFKSGDILQIINV--KDPNWWQAKNI---TAESDKIG 341
            .::||                           |:||.|.:.  |....|.|..:   |.:..:.|
 Frog   671 LQVTC---------------------------GEILHITDTMYKGSYQWFAHRVNAYTMKDGESG 708

  Fly   342 LIPS-----QEL----------------EERRKAFVAPEADYVHKI------GICGTRISKRKRK 379
            :||:     |:|                .:::...|:.:....|.:      |||          
 Frog   709 IIPNYPQAQQQLITTIQHLTWQNGTPRRPQKQIRIVSTDRCNSHLLWTSLDCGIC---------- 763

  Fly   380 TMYRSVANCEFDKA---------ELLLYEEVTRMPPFRRKTL----VLIGVSGVGRRTLKNRLIN 431
                   .||...|         .||.|..||.:     ||:    ||:..|.:| |.|..:|.:
 Frog   764 -------QCEDPPAGSVLGTSCFTLLPYTLVTHL-----KTVIPRPVLLVPSLLG-RILSEKLCS 815

  Fly   432 SDVDKFGAVIPHTSRPKRALEENGSSYWFMDREEMEEAVRNNEFLEYGEHNGNLYGTH------- 489
            |                       ..:...|.|.:.:|..:..:|     .|::.|..       
 Frog   816 S-----------------------KDFIKCDTEYLTDAEYSARYL-----RGDIIGEKEREDVRC 852

  Fly   490 ---LQSIKDVINSGRMCILD----CAPNALKILHNSQELMPFVIFV--AAPGMEQLKTIYADRRA 545
               .|:::.|......|||:    |....|::     .:.|.::.:  .....::||        
 Frog   853 CFTRQNVESVAKQNAHCILELGLSCLSALLRV-----GIYPIILHIPLTEKSTKKLK-------- 904

  Fly   546 TGSNRNLSFDRQSS---IRFSSRRARTLESLASLY---------EDDDLVATVEESSFVQRK 595
                :.|.:.|...   :..|.|....|:||..||         :.:.|:.:|:|:...::|
 Frog   905 ----KPLQWWRNCEDLLMECSQREEAELDSLPCLYHTIDPDSWSDTESLLCSVKEAILDEQK 962

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
variNP_724288.3 L27 <105..128 CDD:280918 5/22 (23%)
PDZ_signaling 173..250 CDD:238492 17/105 (16%)
SH3_MPP 287..347 CDD:212796 11/69 (16%)
Guanylate_kin 408..622 CDD:279019 39/220 (18%)
GuKc 418..622 CDD:214504 35/206 (17%)
card14XP_002937355.2 DD 26..104 CDD:387368
Smc <146..>413 CDD:224117 7/33 (21%)
PDZ_signaling 559..631 CDD:238492 11/72 (15%)
SH3 653..717 CDD:388381 17/90 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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