DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and HAT1

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_193476.1 Gene:HAT1 / 827457 AraportID:AT4G17460 Length:282 Species:Arabidopsis thaliana


Alignment Length:172 Identity:45/172 - (26%)
Similarity:80/172 - (46%) Gaps:19/172 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   268 DLSSSPNLEDLSDLLDASGKT------RTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQ 326
            |.|||....|..:  |..|:|      .:||:..|:...|      ||:.|   :..::|..||:
plant   114 DRSSSRGTSDEEE--DYGGETCRKKLRLSKDQSAVLEDTF------KEHNT---LNPKQKLALAK 167

  Fly   327 TLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHADYSQLLDAKAKLEPGLHLSHSLAHS 391
            .|.|:.|||::|||||||:.:.:..:.....:.....:..:.::.|:.:|.....|.||..|...
plant   168 KLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQ 232

  Fly   392 MNPMAAMNI-PAMRLHPHLAAHSHSLAAVAAHSHQLQQQHSA 432
            |:|...:.: |:.......::.:|:..:|:. |..||..|.:
plant   233 MSPPTTLLMCPSCERVAGPSSSNHNQRSVSL-SPWLQMAHGS 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 20/54 (37%)
HAT1NP_193476.1 HD-ZIP_N 8..98 CDD:461370
HOX 134..188 CDD:197696 22/62 (35%)
HALZ 190..233 CDD:128634 6/42 (14%)
Blue background indicates that the domain is not in the aligned region.

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