Protein Alignment cad and Msx1

DIOPT Version :9

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_112321.2
• Gene: Msx1 / 81710
• RGDID: 620929
• Length: 303
• Species: Rattus norvegicus
• Alignment Length: 325
• Identity: 77/325 - (23%)
• Similarity: 112/325 - (34%)
• Gaps: 113/325 - (34%)

  Fly    72 FHSAAAASAGEWHSPASSTADNF------------VQNVPTSAHQLMQQHHHHHAHASSSSASSG 124
            |...|...||:....|::||...            ...:|.|...||..|....|..|...||.|
  Rat    21 FAKPAGGGAGQAPGAAAATATAMGTDEEGAKPKVPASLLPFSVEALMADHRKPGAKESVLVASEG 85

  Fly   125 SSSSGGAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSE 189
            :.::||:                                       .||:            |:.
  Rat    86 AQAAGGS---------------------------------------VQHL------------GTR 99

  Fly   190 ISSPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNN---NRTSPSKPP 251
            ..|.|||.:.|||                       .|..|.:......:..:   ...||.|..
  Rat   100 PGSLGAPDAPSSP-----------------------GPLGHFSVGGLLKLPEDALVKAESPEKLD 141

  Fly   252 YFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYI 316
            ...||:.|.:  .|.|....||....|.       |.:|..|.|..:|..|.|.||:::...:|:
  Rat   142 RTPWMQSPRF--SPPPARRLSPPACTLR-------KHKTNRKPRTPFTTAQLLALERKFRQKQYL 197

  Fly   317 TIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHADYSQL-LDAKAKLEP 380
            :|..::|.:.:|||:|.||||||||||||.::              :|.|:..:| :.||..|.|
  Rat   198 SIAERAEFSSSLSLTETQVKIWFQNRRAKAKR--------------LQEAELEKLKMAAKPMLPP 248

  Fly   381  380
              Rat   249  248

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeobox	295..347	CDD:278475	25/51 (49%)
Msx1	NP_112321.2	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0850
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810