Protein Alignment cad and Cdx2

DIOPT Version :9

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_076453.1
• Gene: Cdx2 / 66019
• RGDID: 621234
• Length: 310
• Species: Rattus norvegicus
• Alignment Length: 289
• Identity: 111/289 - (38%)
• Similarity: 137/289 - (47%)
• Gaps: 62/289 - (21%)

  Fly    71 MFHSAAAASAGEWHSPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSGSSSSGG----- 130
            |:.|:...|.|...:|     .|||     |..|......:|.|.|::::|:..|:.|.|
  Rat    13 MYPSSVRHSGGLNLAP-----QNFV-----SPPQYPDYGGYHVAAAAAAAANLDSAQSPGPSWPT 67

  Fly   131 APGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSEISSPGA 195
            |.||| |.|..:....|||.....|....:||..:|...:                    |||..
  Rat    68 AYGAP-LREDWNGYAPGGAAAANAVAHGLNGGSPAAAMGY--------------------SSPAE 111

  Fly   196 PTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPS--KPPYFDWMKK 258
            ..:...||||..|..:|.:..:......|..|.      ...:.:...:.|||  :....:||:|
  Rat   112 YHAHHHPHHHPHHPAAAPSCASGLLQTLNPGPP------GPAATAAAEQLSPSGQRRNLCEWMRK 170

  Fly   259 PAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSE 323
            ||     ||.|.|..             ||||||||||||||.||||||||:..|||||||||:|
  Rat   171 PA-----QPSLGSQV-------------KTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAE 217

  Fly   324 LAQTLSLSERQVKIWFQNRRAKERKQNKK 352
            ||.||.|||||||||||||||||||.|||
  Rat   218 LAATLGLSERQVKIWFQNRRAKERKINKK 246

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeobox	295..347	CDD:278475	44/51 (86%)
Cdx2	NP_076453.1	Caudal_act	13..170	CDD:282574	46/193 (24%)
		Homeobox	189..241	CDD:278475	44/51 (86%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	98	1.000	Domainoid score	I7001
eggNOG	1	0.900	-	-		E1_KOG0850
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	142	1.000	Inparanoid score	I4386
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0001802
OrthoInspector	1	1.000	-	-		otm44943
orthoMCL	1	0.900	-	-		OOG6_107786
Panther	1	1.100	-	-	O	PTHR24332
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X14
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	10	9.910