DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and Vax2

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_072159.2 Gene:Vax2 / 64572 RGDID:621133 Length:292 Species:Rattus norvegicus


Alignment Length:307 Identity:79/307 - (25%)
Similarity:119/307 - (38%) Gaps:98/307 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 GVGGA-TDGGP-------GSAPPNHQQHIAEGLPSPPITVSGSEISSPGAPTSASSPHHHLAHHL 210
            |.||| .|.||       |.:....:...||.|.:...:.|..||    |.||||||        
  Rat     2 GDGGAERDRGPKRREEPGGRSGCRGEHRGAEDLRADTGSTSPREI----AGTSASSP-------- 54

  Fly   211 SAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSK---PPYFDWMKKPAYPAQPQPDLSSS 272
               |.:..:..:::...:....::....:..:.:.:..:   |...|                  
  Rat    55 ---AGSRESGGDSDGQQALGETDHCRRILVRDAKGTIREIVLPKGLD------------------ 98

  Fly   273 PNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKI 337
                     ||...:|||......:|    |||:|.:.|  :|:..|.::|||:.|:|||.|||:
  Rat    99 ---------LDRPKRTRTSFTAEQLY----RLEMEFQRC--QYVVGRERTELARQLNLSETQVKV 148

  Fly   338 WFQNRRAKERKQ-----NKKGSD--------PNVMGVGVQHADYSQLLD-----AKAKLEPGL-- 382
            ||||||.|::|.     .|:.|.        .||:.:    .:..:||.     :...|.|||  
  Rat   149 WFQNRRTKQKKDQSRDLEKRASSSASEAFATSNVLRL----LEQGRLLSVPRAPSLLALSPGLPG 209

  Fly   383 ----HLSHSL------AHSMNPM--AAMNIPAMRLHPHLAAHSHSLA 417
                |...||      :..:|||  |:.:.|   |.|.|.|...|.|
  Rat   210 LTAGHRGTSLGDPRNSSQRLNPMPSASASSP---LPPPLPAVCFSAA 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 25/54 (46%)
Vax2NP_072159.2 vax upstream domain 74..101 3/53 (6%)
homeobox 102..161 29/64 (45%)
Homeodomain 103..159 CDD:459649 28/61 (46%)
vax downstream domain 182..193 2/14 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..241 8/31 (26%)
vax terminal domain 266..274
Blue background indicates that the domain is not in the aligned region.

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