DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and hoxa1a

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_571611.1 Gene:hoxa1a / 58051 ZFINID:ZDB-GENE-000823-5 Length:329 Species:Danio rerio


Alignment Length:353 Identity:85/353 - (24%)
Similarity:120/353 - (33%) Gaps:141/353 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 SSIGVGGAGGGGGVGGAT----DGG---------------------------------------- 162
            |||..||.||.||.....    |.|                                        
Zfish     8 SSISGGGDGGSGGSCSVRAFHGDHGLSTFQSSCAVRLNSCSGDERFMSNISSQDVINSQPQQAGS 72

  Fly   163 ---PG------SAPP-----------NH---QQHIAEGLPSP---PITVSGSEISSPGAPTSASS 201
               ||      ||.|           ||   .|.:...:..|   |:..||: ||      |...
Zfish    73 YQSPGTLSITYSAHPSYGTQSFCTGYNHYALNQDVESSVSFPQCGPLVYSGN-IS------STVV 130

  Fly   202 PHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVS----NNNRTSPSKPPY---------- 252
            .|.|..|..|  :.|.:.:.......:|:.|:::..:::    .:|..||...|:          
Zfish   131 QHRHHRHGYS--SGNVHLHGQFQYGSATYGNSSDQANLTFVAGCSNPLSPLHVPHHDACCSPLSD 193

  Fly   253 -------FDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKY------RVVYTDF--- 301
                   |||||....|.                       ||....:|      ..|.|:|   
Zfish   194 GVPTGQTFDWMKVKRNPP-----------------------KTGKAGEYGFGGQPNTVRTNFSTK 235

  Fly   302 QRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHA 366
            |..|||||:..::|:|..|:.|:|.:|.|:|.||||||||||.|::|:.|:|..|..:       
Zfish   236 QLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPKSL------- 293

  Fly   367 DYSQLLDAKAKLEPGLHLSHSLAHSMNP 394
              |:..|...|.|.....|.|...:.:|
Zfish   294 --SEQKDGLEKTEDASEKSPSAPSTPSP 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 29/63 (46%)
hoxa1aNP_571611.1 Antp-type hexapeptide 200..205 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 208..227 4/41 (10%)
Homeodomain 229..282 CDD:459649 27/52 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 277..329 13/52 (25%)

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