DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and CG34367

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster


Alignment Length:220 Identity:65/220 - (29%)
Similarity:94/220 - (42%) Gaps:45/220 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 SNNNRTSPSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRL 304
            ||..:.:|.||      ..|.....|:|    |.|.|. .|.||.|.....:.:.|..:|..|..
  Fly   152 SNTPKLAPDKP------LLPEECVSPEP----SRNREH-CDPLDTSLVNTKQRRSRTNFTLDQLN 205

  Fly   305 ELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKK-------GSDPNVMGVG 362
            |||:.:..:.|.....:.||:|.|.|||.:|::||||||||.||...:       ||....:...
  Fly   206 ELERLFEETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHENQMHKGFLVGSRSPPIATP 270

  Fly   363 VQH---ADYSQLLDAKAKLEPGLHLSH-SLAHSMNPMAAMNIPAMRLHPHLAAHSHSLAAV---A 420
            ::.   |.|..|...::...|    || :.|.|.||.|          |.::..|.|...|   :
  Fly   271 LEPCRVAPYVSLAALRSSSVP----SHPAAATSSNPQA----------PGVSGTSSSGKVVTVDS 321

  Fly   421 AHSH------QLQQQHSAQMSAAAA 439
            .|:|      ...:|.|:.::||||
  Fly   322 PHNHNPAISRSAIKQFSSTVAAAAA 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 23/54 (43%)
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 23/55 (42%)
OAR 392..410 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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