DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and hoxc9

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_001017256.1 Gene:hoxc9 / 550010 XenbaseID:XB-GENE-482330 Length:100 Species:Xenopus tropicalis


Alignment Length:67 Identity:36/67 - (53%)
Similarity:48/67 - (71%) Gaps:0/67 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 RTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKG 353
            |:..|.|..||.:|.||||||:..:.|:|..|:.|:|:.|:|:||||||||||||.|.:|.||:.
 Frog    30 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEK 94

  Fly   354 SD 355
            .|
 Frog    95 PD 96

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 31/54 (57%)
hoxc9NP_001017256.1 Homeodomain 33..81 CDD:459649 25/47 (53%)

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