DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and hoxb3

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_001015971.1 Gene:hoxb3 / 548725 XenbaseID:XB-GENE-482576 Length:386 Species:Xenopus tropicalis


Alignment Length:390 Identity:99/390 - (25%)
Similarity:147/390 - (37%) Gaps:109/390 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 YYNSHHMF--HSAAAASAGEWHSPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSGSSS 127
            ||::..:|  :...|.|.| :..|.        |:.|||:|.     .:....:|.|..|.|  .
 Frog     6 YYDNPTLFGGYPYQAGSLG-YEGPQ--------QSFPTSSHM-----DNEFQRSSCSLQSLG--H 54

  Fly   128 SGGAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSA-PPNHQQHIAEGLPSPPITVSGSEIS 191
            ||....|..||                         ||. .||                ..||.|
 Frog    55 SGPLVKAKNLN-------------------------GSCMRPN----------------LSSEQS 78

  Fly   192 SPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPYFDWM 256
            .|.:||:                    |.::|.||.|:..:.:..:...:....||:....|.||
 Frog    79 QPLSPTA--------------------NPSSNTNSSSSQASLSKPSPAKSQASGSPASKQIFPWM 123

  Fly   257 KKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRK 321
            |:....:: |.....:|..|.........|.:.:| :.|..||..|.:|||||:..:||:...|:
 Frog   124 KESRQNSK-QKSSPPAPAAESCGGDRSPPGSSASK-RARTAYTSAQLVELEKEFHFNRYLCRPRR 186

  Fly   322 SELAQTLSLSERQVKIWFQNRRAKERKQNK-KGSDPNVMG--------------VGVQHADYSQL 371
            .|:|..|:|||||:||||||||.|.:|..| ||...:..|              .|...:.:|..
 Frog   187 VEMANLLNLSERQIKIWFQNRRMKYKKDQKVKGMSSSSGGASPTSTPPLSMQSSAGFLGSMHSMT 251

  Fly   372 LDAKAKLEPGLHLSHSLAHSMNPMAAMNIPAMRLHPHLAA-HSHSLAAVAAHSHQLQQQHSAQMS 435
            .:.:|...|..:.||..|:..||  ....|:.:.:.:.|| :.|         |.||....|.:|
 Frog   252 ANYEAPSPPPFNKSHQNAYYQNP--GKGCPSQQKYGNTAAEYDH---------HGLQGNGGAYVS 305

  Fly   436  435
             Frog   306  305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 29/54 (54%)
hoxb3NP_001015971.1 Homeodomain 157..213 CDD:459649 30/56 (54%)
DUF4074 325..384 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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