Protein Alignment cad and Bsx

DIOPT Version :10

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_001178924.1
• Gene: Bsx / 500982
• RGDID: 1565120
• Length: 232
• Species: Rattus norvegicus
• Alignment Length: 216
• Identity: 63/216 - (29%)
• Similarity: 82/216 - (37%)
• Gaps: 56/216 - (25%)

  Fly   173 HIAEGLPSPPITVSGSEISSPGAPT-SASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNN 236
            |.|..|.|   .|...:...|..|| :..:||.|  |.|                   |...:::
  Rat    40 HFASSLAS---RVPLLDYGYPLMPTPTLLTPHTH--HPL-------------------HKGEHHH 80

  Fly   237 NSVSNNNRTSPSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDF 301
                          |||     .|....|.|.|...|...:|      .||...:.|.|.|::|.
  Rat    81 --------------PYF-----LATSGMPVPALFPHPQHAEL------PGKHCRRRKARTVFSDS 120

  Fly   302 QRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHA 366
            |...|||.:...||::...:.|||..|||||.|||.||||||.|.:||.:|..|......|.:..
  Rat   121 QLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAADGPESP 185

  Fly   367 DYSQL------LDAKAKLEPG 381
            :.|..      .||:..|..|
  Rat   186 EGSPRAPEGAPADARLSLPAG 206

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	28/54 (52%)
Bsx	NP_001178924.1	Homeodomain	111..167	CDD:459649	28/55 (51%)