DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and hoxc8a

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_001005771.1 Gene:hoxc8a / 449648 ZFINID:ZDB-GENE-990415-114 Length:250 Species:Danio rerio


Alignment Length:235 Identity:65/235 - (27%)
Similarity:99/235 - (42%) Gaps:51/235 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 GVGGATDGGPGSAPPNHQ-----QHIAEGLPSPPITVSGSEISSPGAPTS----ASSPHHHL--A 207
            |.|.|   .||...|:|.     .|...|:.:|....:...::..|..|.    .:.|...|  .
Zfish    41 GHGAA---APGFQHPSHHVQDFFHHGTTGISNPGYQQNPCALACHGDATKFYGYEALPRQPLYGT 102

  Fly   208 HHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPYFDWMKKPAYPAQPQPDLSSS 272
            ...:.:|...:..::|:.:|.....:.:.||       |||.  .|.|| :|..|.:        
Zfish   103 QQEATLAQYPDCKSSNSTNPGEGQGHLSQNS-------SPSL--MFPWM-RPHAPGR-------- 149

  Fly   273 PNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKI 337
                       .:|        |..|:.:|.||||||:..:.|:|.:|:.|::..|||:||||||
Zfish   150 -----------RNG--------RQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALSLTERQVKI 195

  Fly   338 WFQNRRAKERKQNKKGSDPNVMGVGVQHADYSQLLDAKAK 377
            ||||||.|.:|:|.|...|...|.....|:.....|.:|:
Zfish   196 WFQNRRMKWKKENNKDKFPGQRGEAEAEAEEEGNEDGEAE 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 29/54 (54%)
hoxc8aNP_001005771.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 112..152 12/68 (18%)
Antp-type hexapeptide. /evidence=ECO:0000255 138..143 3/5 (60%)
Homeodomain 150..206 CDD:459649 30/63 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..250 8/30 (27%)

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