Protein Alignment cad and hoxc8

DIOPT Version :10

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_001006787.1
• Gene: hoxc8 / 448482
• XenbaseID: XB-GENE-480999
• Length: 242
• Species: Xenopus tropicalis
• Alignment Length: 234
• Identity: 63/234 - (26%)
• Similarity: 91/234 - (38%)
• Gaps: 72/234 - (30%)

  Fly   161 GGPGSAPPNHQQHIAEGLPSPPITVSGSEISSPGAPTSASSPHHHLA---HHLSAVANNNNNNNN 222
            ||....|..:.....:.:......|.|...::||    ...|.||:.   ||.|:..:|:....|
 Frog    15 GGESLEPTYYDCRFPQSVSRSHALVYGPSATAPG----FQHPSHHVQEFFHHGSSSLSNSGFQQN 75

  Fly   223 -------NNNS-------------------------PSTHNNNNNNNSVSN---NNRTSPSKPPY 252
                   .:.|                         |...:::|.|.|...   |..:|||.  .
 Frog    76 PCALTCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSSNTNTSEGQGHLNQNSSPSL--M 138

  Fly   253 FDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYIT 317
            |.|| :|..|.:                   .||        |..|:.:|.||||||:..:.|:|
 Frog   139 FPWM-RPHAPGR-------------------RSG--------RQTYSRYQTLELEKEFLFNPYLT 175

  Fly   318 IRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDP 356
            .:|:.|::..|.|:||||||||||||.|.:|:|.|...|
 Frog   176 RKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLP 214

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	28/54 (52%)
hoxc8	NP_001006787.1	Homeodomain	150..206	CDD:459649	30/63 (48%)