Protein Alignment cad and bcd

DIOPT Version :10

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Alignment Length: 285
• Identity: 66/285 - (23%)
• Similarity: 107/285 - (37%)
• Gaps: 65/285 - (22%)

  Fly   196 PTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNN---------NNNNSVSNNNRTSPSKPP 251
            |...:..||.|.|  :....:.:::.:.::.|..|:.:         .|...:..:.||......
  Fly     5 PPDQNFYHHPLPH--THTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFRNPFDLLFDERTGAINYN 67

  Fly   252 YFDWMKKPAYPAQ-PQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRY 315
            |.    :|..|.| |:||:..|   |:|.|.|......||    |..:|..|..|||:.:...||
  Fly    68 YI----RPYLPNQMPKPDVFPS---EELPDSLVMRRPRRT----RTTFTSSQIAELEQHFLQGRY 121

  Fly   316 ITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGV----GVQHAD--------- 367
            :|..|.::|:..|:|...||||||:|||.:.:.|:.:..|.:..|:    |::.:|
  Fly   122 LTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGMPLSPGMKQSDGDPPSLQTL 186

  Fly   368 -------YSQLLDAKAKLEPGLHLSHSLAHSMNPMAAMNIPAMRLHPHLAAHSHS---------- 415
                   .:.|..:.....|..|::...:.|.|  |..|......|.....|.|.
  Fly   187 SLGGGATPNALTPSPTPSTPTAHMTEHYSESFN--AYYNYNGGHNHAQANRHMHMQYPSGGGPGP 249

  Fly   416 ----------LAAVAAHSHQLQQQH 430
                      ......|:||.|..|
  Fly   250 GSTNVNGGQFFQQQQVHNHQQQLHH 274

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	22/54 (41%)
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	20/46 (43%)