Protein Alignment cad and cdx1a

DIOPT Version :9

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_998001.2
• Gene: cdx1a / 405762
• ZFINID: ZDB-GENE-050510-1
• Length: 228
• Species: Danio rerio
• Alignment Length: 240
• Identity: 88/240 - (36%)
• Similarity: 99/240 - (41%)
• Gaps: 102/240 - (42%)

  Fly   128 SGGAPG---APQLNETNSSIGVGGAGGGGGVGGATDGGPGSA---PPNHQQHIAEGLPSPPITVS 186
            ||..||   ...|:.|.||...|             .||||.   ||.:.......||:     :
Zfish    38 SGYHPGPALGNDLHHTGSSWSPG-------------FGPGSRDDWPPLYGHGTGHSLPA-----N 84

  Fly   187 GSEIS---------SPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNN 242
            |.|:|         ..|||.....|.
Zfish    85 GVEVSVLPSVDQGLLSGAPVDREEPQ--------------------------------------- 110

  Fly   243 NRTSPSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELE 307
                       |||::.|.|..|                   .|||||||||||||:|.||||||
Zfish   111 -----------DWMRRSAVPTNP-------------------GGKTRTKDKYRVVYSDVQRLELE 145

  Fly   308 KEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKK 352
            ||:..|||||||||:|||.||:|||||||||||||||||||.|||
Zfish   146 KEFHFSRYITIRRKAELAGTLNLSERQVKIWFQNRRAKERKMNKK 190

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeobox	295..347	CDD:278475	43/51 (84%)
cdx1a	NP_998001.2	Caudal_act	11..115	CDD:282574	27/144 (19%)
		COG5576	<122..227	CDD:227863	59/88 (67%)
		Homeobox	133..185	CDD:278475	43/51 (84%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170579572
Domainoid	1	1.000	97	1.000	Domainoid score	I7177
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0001802
OrthoInspector	1	1.000	-	-		otm25485
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24332
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X14
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	8	7.940