DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and cdx1

DIOPT Version :9

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_989416.1 Gene:cdx1 / 395055 XenbaseID:XB-GENE-485396 Length:262 Species:Xenopus tropicalis


Alignment Length:358 Identity:101/358 - (28%)
Similarity:129/358 - (36%) Gaps:171/358 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 NTLPYTQKHSAANL---AYASAAGQPWNWTPNYHHTP-----PNHQFLGDVDSSHAAHHAAAAHQ 63
            |..|...:|...||   .|..|..| ::..|:|||.|     |:|...|...||:          
 Frog    12 NMYPNPVRHPGLNLNPQNYVPAPPQ-YSDFPSYHHVPGINSDPHHGQPGGTWSSY---------- 65

  Fly    64 MYYNSHHMFHSAAAASAGEWH----SPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSG 124
                         ..|..:||    .|.:|                           |::.|...
 Frog    66 -------------TPSREDWHPYGPGPGAS---------------------------SANPAQIS 90

  Fly   125 SSSSGGAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSE 189
            .|.|...|..|.                         |||..||:                    
 Frog    91 FSPSDYNPVQPP-------------------------GPGLLPPS-------------------- 110

  Fly   190 ISSPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPYFD 254
            ::|..:|.|.|:...:|                                              ::
 Frog   111 LNSSVSPLSPSAQRRNL----------------------------------------------YE 129

  Fly   255 WMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIR 319
            ||::...|        :|.|         ::|||||||||||||||.||||||||:..|||||||
 Frog   130 WMRRTGVP--------TSTN---------SNGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIR 177

  Fly   320 RKSELAQTLSLSERQVKIWFQNRRAKERKQNKK 352
            ||:|||.:|:|:|||||||||||||||||.|||
 Frog   178 RKAELAASLALTERQVKIWFQNRRAKERKVNKK 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeobox 295..347 CDD:278475 42/51 (82%)
cdx1NP_989416.1 Caudal_act 13..133 CDD:282574 40/261 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..120 27/172 (16%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P47902 152..173 16/20 (80%)
Homeobox 153..205 CDD:278475 42/51 (82%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:P47902 191..202 10/10 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..262 7/8 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 96 1.000 Domainoid score I7188
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 113 1.000 Inparanoid score I4705
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001802
OrthoInspector 1 1.000 - - otm47998
Panther 1 1.100 - - LDO PTHR24332
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2707
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.090

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