Protein Alignment cad and msx1

DIOPT Version :10

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_001032329.1
• Gene: msx1 / 394692
• XenbaseID: XB-GENE-490378
• Length: 275
• Species: Xenopus tropicalis
• Alignment Length: 311
• Identity: 77/311 - (24%)
• Similarity: 121/311 - (38%)
• Gaps: 98/311 - (31%)

  Fly   132 PG-----APQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSE-- 189
            ||     :|.:|:..:.:.|       .:|......||..|.:.:..:|:..|       |.|
 Frog    12 PGVKVEESPSVNKMQTGLKV-------ALGEDKPKVPGILPFSVEALMADRKP-------GRERD 62

  Fly   190 ISSP-GAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSP---STHNNNNNNNSVSNNNR------ 244
            :||| |:|.:.:|                       :||   |.......|:.:|..||
 Frog    63 LSSPTGSPLAGTS-----------------------HSPRVGSLAPGETPNSPISIGNRFPVGGI 104

  Fly   245 --------TSPSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDF 301
                    ..|..|....|::.|.:  .|.|....||....|.       |.:|..|.|..:|..
 Frog   105 MKLPEEALVKPESPERSSWIQSPRF--SPSPTRRMSPPACTLR-------KHKTNRKPRTPFTTS 160

  Fly   302 QRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHA 366
            |.|.||:::...:|::|..::|.:.:|:|:|.||||||||||||.::              :|.|
 Frog   161 QLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKR--------------LQEA 211

  Fly   367 DYSQL-LDAKAKLEPGLHLSH---------SLAHSMNPMAAMNIPAMRLHP 407
            :..:| :.||..|.|...:|.         ||..:.||...   ||:.:.|
 Frog   212 ELEKLKMAAKPMLPPAFGISFPLGTPVPTASLYGTSNPFQR---PALPVSP 259

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	25/54 (46%)
msx1	NP_001032329.1	PTZ00449	<55..>259	CDD:185628	66/259 (25%)
		Homeodomain	151..207	CDD:459649	25/55 (45%)