DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and ventx2

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_988862.1 Gene:ventx2 / 394456 XenbaseID:XB-GENE-919664 Length:333 Species:Xenopus tropicalis


Alignment Length:366 Identity:83/366 - (22%)
Similarity:130/366 - (35%) Gaps:83/366 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 TSAHQLMQQHHHHHAHASSSSASSGSSSSGGAPGAPQLNETNSSIG-------VGGAGGGGGVGG 157
            :|...|.|.....|    ....|.|.......| :|.|...||.:.       :....|...|..
 Frog    15 SSVEWLAQSSRRSH----KEQPSKGDQRYSPYP-SPSLPSWNSDVSPSSWNSQLSPVAGSAQVSP 74

  Fly   158 ATDGGPGSAPPNHQQHIAEGLPSPPITVSGSEISSPGAPTSASSPHHHLAHH-----LSAVANNN 217
            .    ||||..:....::.............::::|..|......|...|.|     :|..||..
 Frog    75 C----PGSAQYSSDSELSLYSNEDEDLFCEKDLNTPSTPGDNGLLHRDTATHEYSGMVSVPANTP 135

  Fly   218 NNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLL 282
            ...:|.:.:.|.::.:.::...|..:|:|.:.|             :....:|.|||     |..
 Frog   136 RTTSNEDAAKSGYSTSTDSGYESEASRSSSTAP-------------EGDATVSLSPN-----DTS 182

  Fly   283 DASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKER 347
            |..||...  :.|..:|..|...|||.:...||:....:.:||..|.|||.|:|.||||||.|.:
 Frog   183 DEEGKLGR--RLRTAFTSDQISTLEKTFQKHRYLGASERRKLAAKLQLSEVQIKTWFQNRRMKYK 245

  Fly   348 KQNKKGSDPN--------VMGVG------VQHA------DYSQLLDAKAKLEPGLHLSHSLAHSM 392
            ::.:.|...:        |.|..      .|||      .||.|::..    ||     ::.::|
 Frog   246 REIQDGRPDSYHPAQFFGVYGYSQQPTPVFQHAVQQPYPGYSPLMETL----PG-----TMPYAM 301

  Fly   393 NPMAAMNIPAMRLHPHLAAHSHSLAAVAAHSHQLQQQHSAQ 433
            :|      |||....|..:....:       ..:.|||..|
 Frog   302 HP------PAMDSLNHFNSPPFQM-------FYMPQQHLGQ 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 23/54 (43%)
ventx2NP_988862.1 Homeodomain 190..246 CDD:459649 23/57 (40%)

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