Protein Alignment cad and Cdx1

DIOPT Version :9

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: XP_006254878.3
• Gene: Cdx1 / 364883
• RGDID: 621233
• Length: 273
• Species: Rattus norvegicus
• Alignment Length: 225
• Identity: 92/225 - (40%)
• Similarity: 107/225 - (47%)
• Gaps: 59/225 - (26%)

  Fly   154 GVGGAT--DGGPGSAPPNHQQ-----HIAEGLPSPPITVSG---------SEISSPGAPTSASSP 202
            |:|..|  ..||..|||.:..     |: |..|:||.|.:.         :....||....|:||
  Rat    24 GLGPPTYAPPGPAPAPPQYPDFAGYTHV-EPAPAPPPTWAAPFPAPKDDWAAAYGPGPAVPAASP 87

  Fly   203 HHHLAH----HLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKP------PYFDWMK 257
             ..||.    ..|.|             |:.........:.|.....:||.|      || :||:
  Rat    88 -APLAFGPPPDFSPV-------------PAPPGPGPGILAQSLGGPGAPSSPGVQRRTPY-EWMR 137

  Fly   258 KPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKS 322
            :....|..                 ..||||||||||||||||.||||||||:..||||||||||
  Rat   138 RNVAAAGG-----------------GGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKS 185

  Fly   323 ELAQTLSLSERQVKIWFQNRRAKERKQNKK 352
            |||..|.|:|||||||||||||||||.|||
  Rat   186 ELAANLGLTERQVKIWFQNRRAKERKVNKK 215

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeobox	295..347	CDD:278475	43/51 (84%)
Cdx1	XP_006254878.3	Caudal_act	13..138	CDD:398418	32/129 (25%)
		Homeobox	158..211	CDD:395001	44/52 (85%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	98	1.000	Domainoid score	I7001
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	1	1.000	-	-		otm44943
orthoMCL	1	0.900	-	-		OOG6_107786
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X14
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	5.810