DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and bsh

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster


Alignment Length:407 Identity:94/407 - (23%)
Similarity:145/407 - (35%) Gaps:93/407 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 TPPNHQFLGDVDSSHAAHHAAAAHQM-----YYNSHHMFHSAAAASAGEWHSPASSTADNFVQNV 98
            |.|.|        |.||..|:|...:     :...|.:|.:..:||.....|..:..|.|.....
  Fly    21 TTPTH--------SKAAAMASATTMLTTKTPFSIEHILFQNLNSASNNNNSSDTNGIAANTNNYA 77

  Fly    99 PTSAHQLMQQ-----------HHHHHAHASSSSASSGSSSSGGAPGAPQLNETNSSIGVGGAGGG 152
            |.|:...::.           |.|...|:....:...:|:|..|....:.|:..|          
  Fly    78 PKSSRNAVKSARSAFAHDNNPHKHPSQHSHPPQSHPPASASASATATARSNQAAS---------- 132

  Fly   153 GGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSEISS---------PGAPTSASSPHHHLAH 208
             |..|...|....:.|....|...|...    .:|.:||.         |..||:...|..    
  Fly   133 -GYAGEDYGKSMHSTPRSNHHSRHGTSH----YNGDQISQQLGSGAAQHPPVPTTQPQPPP---- 188

  Fly   209 HLSAVANNNNNNNNN---NNSPSTHNN--NNNNNSVSNNNRTSPSKPPYFDWMKKPAYPAQP--- 265
              ....|..:..:|.   .|:|.|.:.  ......:|.::.|..|..||| ..:...:...|   
  Fly   189 --PPPLNGGSGASNGVLYPNAPYTDHGFLQMTLGYLSPSSGTYKSVDPYF-LSQASLFGGAPFFG 250

  Fly   266 ----QPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQ 326
                .|:|:..     |...::|....|.: |.|.|::|.|...|||.:...||::...:.|||.
  Fly   251 APGCVPELALG-----LGMGVNALRHCRRR-KARTVFSDPQLSGLEKRFEGQRYLSTPERVELAT 309

  Fly   327 TLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHADYSQLLDAKAKLEPGLHLSHSLAHS 391
            .|.|||.|||.||||||.|.:||.::..:.|      :..|:|       :.|||.....:.:.|
  Fly   310 ALGLSETQVKTWFQNRRMKHKKQLRRRDNAN------EPVDFS-------RSEPGKQPGEATSSS 361

  Fly   392 -------MNPMAAMNIP 401
                   :||.:....|
  Fly   362 GDSKHGKLNPGSVGGTP 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 27/54 (50%)
bshNP_477350.2 Homeodomain 275..331 CDD:459649 27/56 (48%)

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