DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and HOXB3

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:XP_016880049.1 Gene:HOXB3 / 3213 HGNCID:5114 Length:578 Species:Homo sapiens


Alignment Length:454 Identity:107/454 - (23%)
Similarity:146/454 - (32%) Gaps:169/454 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 AHASSSSASSGSSSSGGAPGAPQLNETNSSI---------GVGGAGGGGGVGGATDG-------- 161
            |..|.|.|..|  .||...|..:|......|         ...|.|||||||.:..|        
Human    38 ARGSRSPARPG--RSGSFSGNWRLPRPECQIRALLGPWRPNKAGGGGGGGVGASASGPLPQLGGT 100

  Fly   162 ---------------------------GPG---SAPPNHQQHIAEGLPSP-----------PITV 185
                                       |.|   |||...|:..|...|.|           |...
Human   101 LGGCWGLLRVERLGCGWLRRRSPSLGRGSGAWQSAPARTQRPAARRCPRPSGRPHRRGDLSPAAR 165

  Fly   186 SGSE----ISSPGAPTSASSPHHHL-------AHHLSAVAN--NNNNNNNNNNS----------- 226
            ||:.    :..|..|:|.:....||       |..|.::.|  .:..:...|.|           
Human   166 SGARCEYILCLPVLPSSVAKAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPL 230

  Fly   227 --------PSTHNNNNNNNSVSNNNRTSPSKPP-------------YFDWMKKPAYPAQPQPDLS 270
                    ||....:..:|| ||....|.|.||             .|.|||:....::.:   :
Human   231 SAPPGSPPPSAAPTSATSNS-SNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLK---N 291

  Fly   271 SSPNLE----------------------------DLSDLLDASGKTRTKDKYRVVYTDFQRLELE 307
            :||...                            |.|....|:.|     :.|..||..|.:|||
Human   292 NSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASK-----RARTAYTSAQLVELE 351

  Fly   308 KEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNK-------------KGSDPNVM 359
            ||:..:||:...|:.|:|..|:|||||:||||||||.|.:|..|             .||.|..|
Human   352 KEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPM 416

  Fly   360 --GVGVQHADYSQLLDAKAKLEPGLHLSHSLAHSM------------NPMAAMNIPAMRLHPHL 409
              ..|..:|.:|.....::...|....:|..|:::            .|......||....||:
Human   417 QSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHV 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 29/54 (54%)
HOXB3XP_016880049.1 Homeodomain 336..392 CDD:459649 30/60 (50%)
DUF4074 513..576 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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