DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cad and HOXA4

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_002132.3 Gene:HOXA4 / 3201 HGNCID:5105 Length:320 Species:Homo sapiens


Alignment Length:339 Identity:95/339 - (28%)
Similarity:119/339 - (35%) Gaps:108/339 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 PGAPQLNETNSSIGVGGAGGGGGVGGATDGGPG----SAPPNHQQHIAEGLPSPPITVSGSE-IS 191
            |..|...|.....|.|||.||.|      ||||    .|||.  ||:....|..|....|.| .:
Human    15 PKFPPFEEYAQHSGSGGADGGPG------GGPGYQQPPAPPT--QHLPLQQPQLPHAGGGREPTA 71

  Fly   192 SPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPYFDWM 256
            |..||.:|..|.:..|....|           :.:..|..........|......|.:||  ...
Human    72 SYYAPRTAREPAYPAAALYPA-----------HGAADTAYPYGYRGGASPGRPPQPEQPP--AQA 123

  Fly   257 KKPAY--------------PAQPQ-------------------PDLSSSPN----LEDLSDL--- 281
            |.||:              |.||:                   |...|:|.    |.|.|.|   
Human   124 KGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLK 188

  Fly   282 -----------------LDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLS 329
                             ::.|.......:.|..||..|.||||||:..:||:|.||:.|:|.||.
Human   189 GKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253

  Fly   330 LSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHADYSQLLDAKAKLEPGLHLSHSLAHSMNP 394
            ||||||||||||||.|.:|.:|.   ||..                      :..|:|.:.|..|
Human   254 LSERQVKIWFQNRRMKWKKDHKL---PNTK----------------------MRSSNSASASAGP 293

  Fly   395 MAAMNIPAMRLHPH 408
            .......:..||||
Human   294 PGKAQTQSPHLHPH 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 34/54 (63%)
HOXA4NP_002132.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..77 23/65 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 101..168 10/68 (15%)
Antp-type hexapeptide 194..199 0/4 (0%)
Homeodomain 216..272 CDD:459649 34/55 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 273..320 11/60 (18%)

Return to query results.
Submit another query.