DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and VSX1

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_055403.2 Gene:VSX1 / 30813 HGNCID:12723 Length:365 Species:Homo sapiens


Alignment Length:297 Identity:75/297 - (25%)
Similarity:105/297 - (35%) Gaps:109/297 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 SASSGSSSS-----GGAP--GAPQLNETNSSIGV-------GGAGGGGGV---------GGATDG 161
            |.|.|.:||     ||:|  ..|:.......:|:       .|.|.|.|.         |...||
Human     6 SLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGLDG 70

  Fly   162 ----------------GPGSAPPNHQQHIAEGLPS------PPITVSGSEISSPGAPTSASSPHH 204
                            |.|:.||     .|...|.      |.:...|.|   |.||.:.|.|  
Human    71 SSLARGALPLGLGLLCGFGTQPP-----AAARAPCLLLADVPFLPPRGPE---PAAPLAPSRP-- 125

  Fly   205 HLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPYFDWMKKPAYPAQPQPDL 269
                                  |........::|||.::..|.|               :.:.||
Human   126 ----------------------PPALGRQKRSDSVSTSDEDSQS---------------EDRNDL 153

  Fly   270 SSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQ 334
            .:||.|          || |.|.::|.|:|..|..||||.:..:.|..:..:..||....|.|.:
Human   154 KASPTL----------GK-RKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDR 207

  Fly   335 VKIWFQNRRAKERKQNKKGSDPNVM------GVGVQH 365
            :::||||||||.||:.|:....:||      |..|:|
Human   208 IQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRH 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 21/54 (39%)
VSX1NP_055403.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37 9/30 (30%)
Octapeptide motif 31..38 0/6 (0%)
PRK14959 <47..>149 CDD:184923 27/148 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 113..167 22/106 (21%)
Nuclear localization signal. /evidence=ECO:0000255 161..166 3/5 (60%)
Homeodomain 165..221 CDD:459649 21/55 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 290..365
Blue background indicates that the domain is not in the aligned region.

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