Protein Alignment cad and pdx1

DIOPT Version :10

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_571518.2
• Gene: pdx1 / 30721
• ZFINID: ZDB-GENE-990415-122
• Length: 246
• Species: Danio rerio
• Alignment Length: 267
• Identity: 73/267 - (27%)
• Similarity: 102/267 - (38%)
• Gaps: 62/267 - (23%)

  Fly   167 PPNH--------QQHIAEGLPS--PPITVSGSEISSPGAPTSASSPHHHLAHHLSAVANNNNNNN 221
            ||||        |:|..|....  ||........|...:|..|..     ..:|:.:.:.|.::.
Zfish     9 PPNHLYKDSCAFQRHPNEDYSQNPPPCLYMRQAHSVYASPLGAQD-----QPNLTDITSYNMSSR 68

  Fly   222 NNNNSPSTHNNNNNNNSVSN-----------NNRTSPSKPPYFDWMKKPAYPAQPQPDLSSSPNL 275
            ::...|..|....:..|:.:           .:|.....|  |.|||.............:.|.
Zfish    69 DDLAGPHLHLPQTSQTSLQSLGGYGDSLDLCGDRNRYHLP--FPWMKSTKSHTHAWKGQWTGPY- 130

  Fly   276 EDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQ 340
                 :::|....||    |..||..|.||||||:..::||:..|:.|||.||||:||.:|||||
Zfish   131 -----MVEAEENKRT----RTAYTRAQLLELEKEFLFNKYISRPRRVELALTLSLTERHIKIWFQ 186

  Fly   341 NRRAK----ERKQNKKGSDPNVMGVGVQHADYSQLLDAKAKLEPGLHLSHSLAHSMNPMAAMNIP 401
            |||.|    |.|:..:|.||.         ..|.:.....|.|           |....|.:..|
Zfish   187 NRRMKWKKEEDKRRARGVDPE---------QDSSITSGDLKDE-----------SCVGTATLAGP 231

  Fly   402 AMRLHPH 408
            ...||||
Zfish   232 PSPLHPH 238

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	32/58 (55%)
pdx1	NP_571518.2	Homeodomain	138..194	CDD:459649	33/59 (56%)