DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and vsx1

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_571408.1 Gene:vsx1 / 30598 ZFINID:ZDB-GENE-990415-205 Length:344 Species:Danio rerio


Alignment Length:336 Identity:67/336 - (19%)
Similarity:112/336 - (33%) Gaps:94/336 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 SGSSSSG-------GAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPS 180
            ||..|.|       |.....|.:::....|..|.|....|||.:  .||.:.|.....:......
Zfish    30 SGFRSKGFAITDLLGLESELQPHQSGPGAGPNGEGQSAAVGGFS--FPGGSLPLGLGFLCSLAAQ 92

  Fly   181 PPITVSGSEISSPGAPTSASSPHHHLAHHLSAVANNNNNN--NNNNNSPSTHNNNNNNNSVSNNN 243
            .|          ||||.       .|..|:..:.:...::  .|.......:::::..:...|:.
Zfish    93 QP----------PGAPC-------FLPSHIPLLQSRTESHFMQNLEQQRDVYSDDDCLSGDRNDG 140

  Fly   244 RTSPSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEK 308
            :.|                                     .:.:.|.|.::|.|:|..|..||||
Zfish   141 KNS-------------------------------------GNSQKRKKRRHRTVFTSHQLEELEK 168

  Fly   309 EYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVM------GVGVQHAD 367
            .:..:.|..:..:..||....|.|.::::||||||||.||:.|.....:||      |..|:|: 
Zfish   169 AFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHS- 232

  Fly   368 YSQLLDAKAKLEPGLHLSHSLAHSMNPMAAMNIPAMRLHPHLAAHSHSLAAV--------AAHSH 424
                          :.|..|:.:|.......:.....|......|..|:..|        :.||.
Zfish   233 --------------IPLPESIINSAKSGMMGSCAPWLLGEPAGMHKKSMEIVKKAPGTPESTHSD 283

  Fly   425 QLQQQHSAQMS 435
            ...::|..:.|
Zfish   284 TYSEEHKGKDS 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 21/54 (39%)
vsx1NP_571408.1 Octapeptide motif 37..44 0/6 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 49..70 4/20 (20%)
COG5576 101..>221 CDD:227863 33/156 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..156 4/65 (6%)
Nuclear localization signal. /evidence=ECO:0000269|PubMed:11331779 147..151 1/3 (33%)
Homeodomain 152..208 CDD:459649 21/55 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 273..344 4/22 (18%)

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