DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and hoxd3a

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:404 Identity:100/404 - (24%)
Similarity:155/404 - (38%) Gaps:118/404 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 YYNSHHMFHSAAAASAGEWHSPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSGSSSSG 129
            ||::..:|        |.:..|.|   |::... ||            |...||||..:...|  
Zfish     6 YYDNAGLF--------GGYSYPKS---DSYTYG-PT------------HQGFSSSSIENDYQS-- 44

  Fly   130 GAPGAP-------QLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSG 187
              |..|       |....|           |.:.|:. ..|.::..|.|          |.::|.
Zfish    45 --PICPIQTTSVRQATHKN-----------GDINGSC-MRPSASQGNSQ----------PESISE 85

  Fly   188 SEISSPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSP---SK 249
            .:   ..||.:||||                       ||||::.....:..||.:.|:.   ||
Zfish    86 QQ---QAAPLAASSP-----------------------SPSTNSTQKKKSPSSNGSSTATPVISK 124

  Fly   250 PPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSR 314
             ..|.|||:....|:.:.  ::.|...:..|  |.|.......:.|..||..|.:|||||:..:|
Zfish   125 -QIFPWMKETRQNAKQKS--TNCPAAGETCD--DKSPPGPASKRVRTAYTSAQLVELEKEFHFNR 184

  Fly   315 YITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHADYSQLLDAKAKLE 379
            |:...|:.|:|..|:|:|||:||||||||.|.:|..|        ..|:.|:......|....|.
Zfish   185 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK--------SKGIMHSPLGHSPDRSPPLS 241

  Fly   380 PGLHLSHS-LAHSMNPMAAMNIPAMRLHPHLAAHSHSLAAVAAHSHQL-----QQQ--------- 429
            ...|:.:| ...::|.: :.:.|:   .|..|....::..:||::..|     ||:         
Zfish   242 GSNHIGYSGQLPNVNSL-SYDAPS---PPSFAKPQQNIYGLAAYTAPLGGCIPQQKRYPGTEYDH 302

  Fly   430 HSAQMSAAAAVGTL 443
            ||.|.:.:.|...|
Zfish   303 HSMQGNGSFANANL 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 28/54 (52%)
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 46/217 (21%)
COG5576 116..237 CDD:227863 45/133 (34%)
Antp-type hexapeptide 126..131 2/4 (50%)
Homeodomain 162..218 CDD:459649 28/55 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 5/34 (15%)
DUF4074 333..394 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
Blue background indicates that the domain is not in the aligned region.

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