DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and hoxb3a

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_571192.2 Gene:hoxb3a / 30339 ZFINID:ZDB-GENE-990415-104 Length:417 Species:Danio rerio


Alignment Length:367 Identity:95/367 - (25%)
Similarity:143/367 - (38%) Gaps:88/367 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 YYNSHHMF--HSAAAASAGEWHSPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSGSSS 127
            ||::..:|  :|...|:...:.:||.:     .||   |||.     ...:..::.|..|.|:| 
Zfish     6 YYDNSTLFGGYSYQGANGFGYDAPAPA-----FQN---SAHL-----EGDYQRSACSLQSLGTS- 56

  Fly   128 SGGAPGAPQ---LNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSE 189
               ||..||   ..|.|.|.                 ...|.||.|.         ||..||..:
Zfish    57 ---APPQPQHAKTKELNGSC-----------------MRPSLPPEHH---------PPPQVSPPQ 92

  Fly   190 ISSPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPS-KPPYF 253
            .:...|.|:|:                .....:.....:.....:.::|.|::..|:|: ....|
Zfish    93 NTVNVAATNAT----------------QQPGGSGGGGVAGSGGTSKSSSKSSSMATNPTLTKQIF 141

  Fly   254 DWMK--------KPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEY 310
            .|||        |.:.|:      :||.|.|.........|...:| :.|..||..|.:|||||:
Zfish   142 PWMKESRQNTKQKNSSPS------ASSANAESSGGEKSPPGSAASK-RARTAYTSAQLVELEKEF 199

  Fly   311 CTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHADYSQLLDAK 375
            ..:||:...|:.|:|..|:|||||:||||||||.|.:|..|.      .|:|......|......
Zfish   200 HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKS------KGIGSSSGGPSPTGSPP 258

  Fly   376 AKLEPGLHLSHSLAHSMNPMAAMNIPAMRLHPHLAAHSHSLA 417
            ..::......:|: |||....|.:.|:.. .||..|::.|.|
Zfish   259 LPMQSSAGFMNSM-HSMGSYDAPSPPSFN-KPHQNAYAMSTA 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 29/54 (54%)
hoxb3aNP_571192.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..135 24/129 (19%)
Antp-type hexapeptide 140..145 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..184 8/43 (19%)
Homeodomain 181..237 CDD:459649 30/56 (54%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..290 12/60 (20%)
DUF4074 353..415 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..417
Blue background indicates that the domain is not in the aligned region.

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