Protein Alignment cad and ind

DIOPT Version :10

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Alignment Length: 362
• Identity: 96/362 - (26%)
• Similarity: 146/362 - (40%)
• Gaps: 108/362 - (29%)

  Fly    74 SAAAASAGEWHSPA-------SSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSGS------ 125
            :||||.|.....|:       :|...:::.::.....|..||....||.|::::|::.:
  Fly    32 TAAAAVAAAAMLPSIPMLPYPASYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAAAAAAALQQHP 96

  Fly   126 --SSSGGAPGAP--QL--NETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQ----H------I 174
              |||.|:...|  ||  ::..||       |.....|.....|.||.||.||    |      :
  Fly    97 HVSSSPGSLYHPYAQLFASKRKSS-------GFSNYEGCYPSPPLSANPNSQQLPPIHNLYGSPV 154

  Fly   175 AEGLPSPPITVSGSEISSPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSV 239
            ..|||.|.   .||..:||.|.:|||..:             .||.:........|.::.:.||.
  Fly   155 VGGLPLPE---PGSFCTSPSASSSASLDY-------------TNNFDEPQGKRFKHESSCSPNSS 203

  Fly   240 SNNNRTSPSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRL 304
            ...|.:|..             |.:..|         .::|..|:|.:.||      .:|..|.|
  Fly   204 PLKNHSSGG-------------PVEITP---------LINDYADSSKRIRT------AFTSTQLL 240

  Fly   305 ELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHADYS 369
            |||:|:..:.|::..|:.|:|..|.|||:||||||||||.   ||.|.||:
  Fly   241 ELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRV---KQKKGGSE-------------- 288

  Fly   370 QLLDAKAKLEPGLHLSHSLAHSMNPMAAMNIPAMRLH 406
                     .|..:||.:  .:.:|.|:...|.:::|
  Fly   289 ---------SPTFNLSTN--SNGSPQASPVSPQVKVH 314

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	25/54 (46%)
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	29/64 (45%)