DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and Shox2

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_038693.1 Gene:Shox2 / 20429 MGIID:1201673 Length:331 Species:Mus musculus


Alignment Length:367 Identity:95/367 - (25%)
Similarity:131/367 - (35%) Gaps:147/367 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 SSSASSGSSSSGGAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPP 182
            ||.|...:...|||.|             ||.|||||.|||..||.|......:..:.|      
Mouse    51 SSPAVRAAGGGGGAGG-------------GGGGGGGGGGGAGGGGAGGGAGGGRSPVRE------ 96

  Fly   183 ITVSGSEIS-SPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTS 246
            :.:..:|.| .||:|            .|:.|                                 
Mouse    97 LDMGAAERSREPGSP------------RLTEV--------------------------------- 116

  Fly   247 PSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASG---KTRTKDKYRVVYTDF---QRLE 305
                                     ||.|:|..|  ||.|   :.:||.|.|...|:|   |..|
Mouse   117 -------------------------SPELKDRKD--DAKGMEDEGQTKIKQRRSRTNFTLEQLNE 154

  Fly   306 LEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMG---------- 360
            ||:.:..:.|.....:.||:|.|.|||.:|::||||||||.|||..:.....::|          
Mouse   155 LERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRV 219

  Fly   361 -----VGVQHADYSQLLDAKAKLEP-------GLHLSHSLAHSMNPMAAMNIPAMRLHPHLAAHS 413
                 ||.....:.|  |:...:.|       .|.|..::||:.:          .||||||||:
Mouse   220 APYVNVGALRMPFQQ--DSHCNVTPLSFQVQAQLQLDSAVAHAHH----------HLHPHLAAHA 272

  Fly   414 H-----------SLAAVAAHSHQLQQQHSAQMSAAAAVGTLS 444
            .           .||.:||.|    ...::.::||||..|.|
Mouse   273 PYMMFPAPPFGLPLATLAADS----ASAASVVAAAAAAKTTS 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 25/57 (44%)
Shox2NP_038693.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 26..140 38/179 (21%)
Homeodomain 141..197 CDD:459649 24/55 (44%)
OAR 311..327 CDD:461067 95/367 (26%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 313..326
Blue background indicates that the domain is not in the aligned region.

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