Protein Alignment cad and pal-1

DIOPT Version :10

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_001021209.1
• Gene: pal-1 / 175638
• WormBaseID: WBGene00003912
• Length: 270
• Species: Caenorhabditis elegans
• Alignment Length: 251
• Identity: 75/251 - (29%)
• Similarity: 112/251 - (44%)
• Gaps: 69/251 - (27%)

  Fly   124 GSSSSGGAP-----GAPQLNETNSSIGVGGAGGGGGVGGATDGGP----GSAPPNHQQHIAEGLP 179
            |.:...|.|     |.|||          .|.|......|.|..|    ||:..:...:     |
 Worm    64 GDTGFYGHPDLYPFGLPQL----------AANGQIPAVEAVDVKPPLSNGSSSSDSGMY-----P 113

  Fly   180 SP-------PITVSGSEISSPGAPTSASSPHHHL------AHHLSAVANNNNNNNNNNNSPSTHN 231
            ||       |.|.||:..||..:..:|::.::.:      ...:....:.......:...|..:|
 Worm   114 SPSDMMTPFPSTSSGAASSSELSAAAAAAANYQMRAATCYQQSVWPFMDYQQFQGFSWKMPLGNN 178

  Fly   232 NNNNNNSVSNNNRTSPSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRV 296
            :..:..| |::.:|.|:.|                    .:.|:           :.||.||||:
 Worm   179 HGKDRRS-SSDGKTLPTGP--------------------GTNNV-----------RVRTADKYRM 211

  Fly   297 VYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKK 352
            ||:|:||||||||:.||.:||..|||:|:..|||:|||:||||||||||:|:..:|
 Worm   212 VYSDYQRLELEKEFHTSPFITSDRKSQLSTMLSLTERQIKIWFQNRRAKDRRDKQK 267

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	38/54 (70%)
pal-1	NP_001021209.1	Homeodomain	208..263	CDD:459649	38/54 (70%)